Variant report

Variant	rs4905568
Chromosome Location	chr14:97383006-97383007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97378925..97381574-chr14:97382835..97384827,2	K562	blood:
2	chr14:97375172..97378405-chr14:97381743..97385495,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10131201	0.86[ASN][1000 genomes]
rs10131630	0.82[ASN][1000 genomes]
rs10145383	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10146571	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10149107	0.84[ASN][1000 genomes]
rs10873476	0.91[ASN][1000 genomes]
rs11160369	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11160375	0.91[ASN][1000 genomes]
rs11628733	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12433112	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12434466	1.00[JPT][hapmap]
rs12587324	0.81[AMR][1000 genomes]
rs12589919	0.81[CHB][hapmap]
rs12878184	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12882853	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12894621	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs12897588	0.90[CHB][hapmap]
rs12897731	0.82[ASN][1000 genomes]
rs1951311	0.84[ASN][1000 genomes]
rs1951312	0.87[ASN][1000 genomes]
rs1957137	0.86[ASN][1000 genomes]
rs2145636	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2180896	0.84[ASN][1000 genomes]
rs2224442	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2230532	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4270096	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4900346	0.90[CHB][hapmap]
rs4900349	0.82[ASN][1000 genomes]
rs4900350	0.90[CHB][hapmap]
rs4900351	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4900353	0.90[CHB][hapmap]
rs4905547	0.84[ASN][1000 genomes]
rs4905548	0.90[CHB][hapmap]
rs4905551	1.00[CHB][hapmap]
rs4905552	0.84[ASN][1000 genomes]
rs4905553	0.84[ASN][1000 genomes]
rs4905555	0.83[ASN][1000 genomes]
rs4905558	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4905560	0.87[ASN][1000 genomes]
rs4905564	0.97[ASN][1000 genomes]
rs58514314	0.82[ASN][1000 genomes]
rs61981027	0.84[ASN][1000 genomes]
rs61981034	0.80[AMR][1000 genomes]
rs7156355	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7160250	0.80[JPT][hapmap]
rs723810	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs736929	0.90[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs749279	0.90[CHB][hapmap]
rs764300	0.90[CHB][hapmap]
rs8013081	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs8016614	0.87[ASN][1000 genomes]
rs9285600	0.82[ASN][1000 genomes]
rs9323951	0.82[ASN][1000 genomes]
rs9323954	0.84[ASN][1000 genomes]
rs9323955	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:97376800-97387600	Weak transcription	Thymus	Thymus
3	chr14:97379000-97387800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:97381200-97383800	Weak transcription	Fetal Brain Male	brain
6	chr14:97381200-97386200	Weak transcription	Adipose Nuclei	Adipose
7	chr14:97381400-97383600	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:97381400-97386400	Weak transcription	Fetal Brain Female	brain
9	chr14:97381400-97386600	Weak transcription	Dnd41	blood
10	chr14:97383000-97383600	Enhancers	K562	blood

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