Variant report

Variant	rs10131201
Chromosome Location	chr14:97351837-97351838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97351238..97352821-chr14:97355871..97358736,2	K562	blood:
2	chr14:97349904..97353834-chr14:97354372..97357371,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10131630	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149107	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10873476	0.83[ASN][1000 genomes]
rs11160369	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11160371	0.92[ASN][1000 genomes]
rs11160375	0.83[ASN][1000 genomes]
rs11628733	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12433112	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12434466	0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12435963	0.91[ASN][1000 genomes]
rs12589919	0.90[CHB][hapmap]
rs12590723	0.91[ASN][1000 genomes]
rs12878184	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12882853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12894621	0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs12897588	0.90[CHB][hapmap]
rs12897731	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1951311	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951312	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957137	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145636	0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs2180896	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2224442	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2230532	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3825576	0.90[ASN][1000 genomes]
rs4270096	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4900346	0.90[CHB][hapmap]
rs4900347	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4900349	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4900350	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs4900351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900353	1.00[CHB][hapmap]
rs4905546	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4905547	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4905548	0.91[CHB][hapmap]
rs4905551	1.00[CHB][hapmap]
rs4905552	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4905553	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4905555	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4905557	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4905558	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4905560	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4905564	0.83[ASN][1000 genomes]
rs4905568	0.86[ASN][1000 genomes]
rs58514314	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61981027	0.99[ASN][1000 genomes]
rs67804110	0.86[ASN][1000 genomes]
rs67957817	0.87[ASN][1000 genomes]
rs7141028	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71419296	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7156355	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722869	0.85[ASN][1000 genomes]
rs723810	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs736929	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs749279	1.00[CHB][hapmap]
rs764300	0.91[CHB][hapmap]
rs8013081	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016614	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9285600	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323951	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323954	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323955	0.90[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
2	chr14:97297600-97353400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:97299400-97353600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:97303400-97371600	Weak transcription	Ovary	ovary
5	chr14:97314800-97355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:97322200-97354200	Weak transcription	Hela-S3	cervix
7	chr14:97323800-97354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:97324000-97352600	Weak transcription	HMEC	breast
9	chr14:97324200-97354200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:97325200-97353800	Weak transcription	Fetal Lung	lung
11	chr14:97325200-97354600	Weak transcription	Thymus	Thymus
12	chr14:97325600-97362000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:97331000-97378400	Weak transcription	A549	lung
14	chr14:97337400-97354200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:97338400-97355200	Weak transcription	Psoas Muscle	Psoas
16	chr14:97341000-97354200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:97341400-97357400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:97342800-97354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:97342800-97367000	Weak transcription	NHEK	skin
20	chr14:97343200-97354600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:97344200-97353200	Weak transcription	K562	blood
22	chr14:97345200-97353400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:97347000-97354600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:97347200-97353800	Weak transcription	Fetal Thymus	thymus
26	chr14:97347200-97354600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:97348200-97354200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr14:97348200-97361400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:97348600-97356000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:97349000-97354600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:97349200-97353600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:97349200-97355000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:97349200-97359200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:97349200-97367200	Weak transcription	Primary B cells from cord blood	blood
35	chr14:97349200-97367600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
37	chr14:97349400-97354200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:97349400-97354600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:97349400-97354600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:97349400-97354800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:97349400-97355000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:97349400-97356600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:97349400-97359000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr14:97351400-97353400	Weak transcription	Dnd41	blood
46	chr14:97351800-97352200	Strong transcription	GM12878-XiMat	blood

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