Variant report

Variant	rs12435963
Chromosome Location	chr14:97359800-97359801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97352755..97357017-chr14:97358100..97363870,8	K562	blood:
2	chr14:97352755..97355141-chr14:97359581..97361820,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10131201	0.91[ASN][1000 genomes]
rs10131630	0.87[ASN][1000 genomes]
rs10131890	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10145383	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10146571	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10149107	0.90[ASN][1000 genomes]
rs10873476	0.86[ASN][1000 genomes]
rs11160369	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11160371	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11160375	0.86[ASN][1000 genomes]
rs11628733	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12433112	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12434466	0.81[ASW][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.96[ASN][1000 genomes]
rs12589919	0.81[CHB][hapmap]
rs12590723	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12878184	0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12882853	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12894621	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12897588	0.81[CHB][hapmap]
rs12897731	0.87[ASN][1000 genomes]
rs17094645	0.88[TSI][hapmap]
rs1951311	0.90[ASN][1000 genomes]
rs1951312	0.92[ASN][1000 genomes]
rs1957137	0.91[ASN][1000 genomes]
rs2145636	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2180896	0.90[ASN][1000 genomes]
rs2224442	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2230532	0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3825576	0.94[ASN][1000 genomes]
rs4270096	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4900346	0.81[CHB][hapmap]
rs4900347	0.85[ASN][1000 genomes]
rs4900349	0.87[ASN][1000 genomes]
rs4900350	0.81[CHB][hapmap]
rs4900351	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4900353	0.90[CHB][hapmap]
rs4905546	0.85[ASN][1000 genomes]
rs4905547	0.90[ASN][1000 genomes]
rs4905548	0.81[CHB][hapmap]
rs4905551	1.00[CHB][hapmap]
rs4905552	0.90[ASN][1000 genomes]
rs4905553	0.90[ASN][1000 genomes]
rs4905555	0.88[ASN][1000 genomes]
rs4905558	0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4905560	0.92[ASN][1000 genomes]
rs58514314	0.87[ASN][1000 genomes]
rs61981027	0.90[ASN][1000 genomes]
rs67804110	0.90[ASN][1000 genomes]
rs67957817	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7156355	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs722869	0.89[ASN][1000 genomes]
rs723810	0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs736929	0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs749279	0.90[CHB][hapmap]
rs764300	0.81[CHB][hapmap]
rs8013081	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8016614	0.92[ASN][1000 genomes]
rs9285600	0.87[ASN][1000 genomes]
rs9323951	0.87[ASN][1000 genomes]
rs9323954	0.90[ASN][1000 genomes]
rs9323955	0.81[CHB][hapmap];0.92[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
2	chr14:97303400-97371600	Weak transcription	Ovary	ovary
3	chr14:97325600-97362000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:97331000-97378400	Weak transcription	A549	lung
5	chr14:97342800-97367000	Weak transcription	NHEK	skin
6	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:97348200-97361400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:97349200-97367200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:97349200-97367600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
11	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:97354000-97360200	Weak transcription	Dnd41	blood
13	chr14:97355200-97363200	Weak transcription	K562	blood
14	chr14:97355400-97360400	Weak transcription	GM12878-XiMat	blood
15	chr14:97355400-97361000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:97356000-97361800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:97357600-97362000	Weak transcription	Thymus	Thymus

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