Variant report

Variant	rs4900347
Chromosome Location	chr14:97262907-97262908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:97262871-97262921	HCPEpiC	choroid plexus:	n/a
2	chr14:97262871-97262921	U87	brain:	n/a
3	chr14:97262871-97262921	HL-60	blood:	n/a
4	chr14:97262871-97262921	SK-N-SH	brain:	n/a
5	chr14:97262871-97262921	CMK	blood:	n/a
6	chr14:97262871-97262921	BE2_C	brain:	n/a
7	chr14:97262871-97262921	SK-N-SH_RA	brain:	n/a
8	chr14:97262871-97262921	HMEC	breast:	n/a
9	chr14:97262871-97262921	BJ	skin:	n/a
10	chr14:97262871-97262921	IMR90	lung:	fetal
11	chr14:97262871-97262921	NHDF-neo	bronchial:	n/a
12	chr14:97262871-97262921	AG09319	gingival:	n/a
13	chr14:97262871-97262921	GM12891	blood:	n/a
14	chr14:97262871-97262921	ECC-1	luminal epithelium:	n/a
15	chr14:97262871-97262921	MCF10A-Er-Src	breast:	n/a
16	chr14:97262871-97262921	HCF	heart:	n/a
17	chr14:97262871-97262921	Caco-2	colon:	n/a
18	chr14:97262871-97262921	HRE	kidney:	n/a
19	chr14:97262871-97262921	AG10803	skin:	n/a
20	chr14:97262871-97262921	Jurkat	blood:	n/a
21	chr14:97262871-97262921	SKMC	muscle:	n/a
22	chr14:97262871-97262921	GM06990	blood:	n/a
23	chr14:97262871-97262921	K562	blood:	n/a
24	chr14:97262871-97262921	GM19239	blood:	n/a
25	chr14:97262871-97262921	AoSMC	blood vessel:	n/a
26	chr14:97262871-97262921	A549	lung:	n/a
27	chr14:97262871-97262921	HRCEpiC	kidney:	n/a
28	chr14:97262871-97262921	HPAEpiC	pulmonary alveolar:	n/a
29	chr14:97262871-97262921	HRPEpiC	eye:	n/a
30	chr14:97262871-97262921	GM12892	blood:	n/a
31	chr14:97262871-97262921	NHBE	bronchial:	n/a
32	chr14:97262871-97262921	ProgFib	skin:	n/a
33	chr14:97262871-97262921	Hepatocyte	liver:	n/a
34	chr14:97262871-97262921	PrEC	prostate:	n/a
35	chr14:97262871-97262921	HNPCEpiC	eye:	n/a
36	chr14:97262871-97262921	HUVEC	blood vessel:	n/a
37	chr14:97262871-97262921	MCF-7	breast:	n/a
38	chr14:97262871-97262921	SAEC	small airway:	n/a
39	chr14:97262871-97262921	NT2-D1	testis:	n/a
40	chr14:97262871-97262921	PFSK-1	brain:	n/a
41	chr14:97262871-97262921	AG04449	skin:	fetal
42	chr14:97262871-97262921	SK-N-MC	brain:	n/a
43	chr14:97262871-97262921	PANC-1	pancreas:	n/a
44	chr14:97262871-97262921	HIPEpiC	eye:	n/a
45	chr14:97262871-97262921	HCT-116	colon:	n/a
46	chr14:97262871-97262921	GM12878	blood:	n/a
47	chr14:97262871-97262921	NB4	blood:	n/a
48	chr14:97262871-97262921	AG09309	skin:	n/a
49	chr14:97262871-97262921	T-47D	breast:	n/a
50	chr14:97262871-97262921	NH-A	brain:	n/a

No data

Variant related genes	Relation type
VRK1	CpG island

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10131201	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10131630	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145383	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10146571	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10149107	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11160369	0.86[ASN][1000 genomes]
rs11160371	0.86[ASN][1000 genomes]
rs11628733	0.86[ASN][1000 genomes]
rs12433112	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12434466	0.86[ASN][1000 genomes]
rs12435963	0.85[ASN][1000 genomes]
rs12590723	0.85[ASN][1000 genomes]
rs12878184	0.96[ASN][1000 genomes]
rs12882853	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12894621	0.88[ASN][1000 genomes]
rs12897731	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1951311	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951312	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957137	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2145636	0.85[ASN][1000 genomes]
rs2180896	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2224442	0.86[ASN][1000 genomes]
rs2230532	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825576	0.86[ASN][1000 genomes]
rs4270096	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4900349	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4900350	0.80[ASN][1000 genomes]
rs4900351	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4905546	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4905547	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4905552	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4905553	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4905555	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4905557	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4905558	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4905560	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58514314	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61981027	0.95[ASN][1000 genomes]
rs67804110	0.92[ASN][1000 genomes]
rs67957817	0.81[ASN][1000 genomes]
rs7141028	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71419296	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7156355	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs722869	0.86[ASN][1000 genomes]
rs723810	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs736929	0.92[ASN][1000 genomes]
rs8013081	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016614	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285600	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9323951	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9323954	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9323955	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97259200-97263600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr14:97261800-97263200	Enhancers	HepG2	liver
3	chr14:97262000-97263200	Weak transcription	K562	blood
4	chr14:97262200-97263400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr14:97262400-97263200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr14:97262400-97263400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr14:97262800-97263200	Enhancers	Dnd41	blood
8	chr14:97262800-97263600	Weak transcription	Primary B cells from cord blood	blood

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