Variant report

Variant	rs7141028
Chromosome Location	chr14:97333357-97333358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10131201	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10131630	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10145383	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10146571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10149107	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12433112	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12882853	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12897731	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1951311	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1957137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2180896	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2230532	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4270096	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4900347	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4900349	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4900351	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905546	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4905547	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4905552	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4905553	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4905555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4905558	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905560	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58514314	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71419296	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7156355	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs723810	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs736929	0.84[AMR][1000 genomes]
rs8013081	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8016614	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9285600	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9323951	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9323954	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1051182	chr14:97275088-97337039	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
2	chr14:97297600-97353400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:97298800-97348800	Strong transcription	Dnd41	blood
4	chr14:97298800-97350600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:97299400-97353600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:97303400-97371600	Weak transcription	Ovary	ovary
7	chr14:97303600-97337400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:97308200-97348800	Weak transcription	Fetal Intestine Small	intestine
9	chr14:97309600-97344400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:97314800-97333400	Weak transcription	Esophagus	oesophagus
11	chr14:97314800-97344000	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:97314800-97347600	Weak transcription	Lung	lung
13	chr14:97314800-97355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:97315600-97343800	Weak transcription	Left Ventricle	heart
15	chr14:97315600-97346600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:97315600-97350400	Weak transcription	NHDF-Ad	bronchial
17	chr14:97316000-97344400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:97321800-97343800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:97322000-97344600	Weak transcription	HUVEC	blood vessel
20	chr14:97322000-97348400	Weak transcription	HSMM	muscle
21	chr14:97322200-97354200	Weak transcription	Hela-S3	cervix
22	chr14:97323800-97354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:97324000-97342400	Weak transcription	Fetal Intestine Large	intestine
24	chr14:97324000-97350800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:97324000-97352600	Weak transcription	HMEC	breast
26	chr14:97324200-97342000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:97324200-97342000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:97324200-97342400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr14:97324200-97346400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:97324200-97348400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr14:97324200-97350600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:97324200-97354200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:97324400-97346000	Weak transcription	HepG2	liver
34	chr14:97324800-97346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:97325200-97342200	Weak transcription	Adipose Nuclei	Adipose
36	chr14:97325200-97342600	Weak transcription	GM12878-XiMat	blood
37	chr14:97325200-97353800	Weak transcription	Fetal Lung	lung
38	chr14:97325200-97354600	Weak transcription	Thymus	Thymus
39	chr14:97325600-97342200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr14:97325600-97362000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr14:97326200-97342400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:97326400-97340600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr14:97328800-97338800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:97329800-97336400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr14:97330000-97333800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr14:97330000-97341000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:97330200-97341800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:97330400-97340600	Weak transcription	NHEK	skin
49	chr14:97330400-97342000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:97330400-97342400	Weak transcription	H1 Cell Line	embryonic stem cell

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