Variant report

Variant	rs4910044
Chromosome Location	chr11:9370216-9370217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11042282	0.85[EUR][1000 genomes]
rs11042294	0.91[EUR][1000 genomes]
rs11601789	0.86[EUR][1000 genomes]
rs11605674	0.88[EUR][1000 genomes]
rs35347227	0.88[EUR][1000 genomes]
rs4910043	0.95[EUR][1000 genomes]
rs4910450	0.81[EUR][1000 genomes]
rs4910456	0.97[EUR][1000 genomes]
rs55640358	0.81[EUR][1000 genomes]
rs55793943	0.81[EUR][1000 genomes]
rs6486283	0.88[EUR][1000 genomes]
rs7115641	0.88[EUR][1000 genomes]
rs7115750	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9368600-9370600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:9368800-9370400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:9368800-9370400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:9369200-9373000	Weak transcription	Fetal Heart	heart
5	chr11:9369600-9370400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:9369600-9384000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:9369800-9370400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:9369800-9372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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