Variant report

Variant	rs11605674
Chromosome Location	chr11:9357687-9357688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11042260	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11042282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11042294	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1136330	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11600994	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11601340	0.93[AMR][1000 genomes]
rs11601383	0.93[AMR][1000 genomes]
rs11601789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604198	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11604607	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11605358	1.00[AFR][1000 genomes]
rs11606740	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11607790	1.00[AFR][1000 genomes]
rs35347227	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4910036	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4910038	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4910039	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910043	0.93[EUR][1000 genomes]
rs4910044	0.88[EUR][1000 genomes]
rs4910449	1.00[AFR][1000 genomes]
rs4910450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910456	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55640358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55793943	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55980718	0.93[AMR][1000 genomes]
rs55989000	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs55994936	1.00[AFR][1000 genomes]
rs56081129	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56292930	1.00[AFR][1000 genomes]
rs6486283	0.90[EUR][1000 genomes]
rs7115641	0.90[EUR][1000 genomes]
rs7115750	0.90[EUR][1000 genomes]
rs7394938	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7395453	1.00[AFR][1000 genomes]
rs7395754	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7396336	0.93[AMR][1000 genomes]
rs7396512	1.00[AFR][1000 genomes]
rs956516	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
6	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
7	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9351000-9358800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:9351200-9368800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:9353200-9361000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:9353200-9368800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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