Variant report

Variant	rs7396336
Chromosome Location	chr11:9205656-9205657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9203394..9206265-chr11:9276047..9277871,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11042260	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11042282	0.93[AMR][1000 genomes]
rs11042294	0.87[AMR][1000 genomes]
rs1136330	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11600093	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11600994	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11601190	0.90[EUR][1000 genomes]
rs11601229	0.93[EUR][1000 genomes]
rs11601340	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11601383	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11601789	0.93[AMR][1000 genomes]
rs11603759	0.86[AMR][1000 genomes]
rs11604054	0.90[EUR][1000 genomes]
rs11604121	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11604198	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11604607	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11605358	0.86[EUR][1000 genomes]
rs11605674	0.93[AMR][1000 genomes]
rs11606260	0.82[EUR][1000 genomes]
rs11606740	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11606969	0.90[EUR][1000 genomes]
rs11607790	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16906708	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16914802	0.80[EUR][1000 genomes]
rs35347227	0.87[AMR][1000 genomes]
rs36005639	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4351820	0.83[EUR][1000 genomes]
rs4622264	0.80[EUR][1000 genomes]
rs4910036	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910038	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910039	1.00[AMR][1000 genomes]
rs4910450	0.93[AMR][1000 genomes]
rs55640358	0.93[AMR][1000 genomes]
rs55723890	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55741313	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55793943	0.93[AMR][1000 genomes]
rs55980718	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55989000	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55994936	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56002897	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56065481	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56081129	0.93[AMR][1000 genomes]
rs56292930	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7394938	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7395168	0.90[EUR][1000 genomes]
rs7395453	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7395754	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7396512	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9215	0.83[EUR][1000 genomes]
rs956516	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:9184200-9208200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:9196800-9208200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:9197000-9210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:9198400-9209800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:9198400-9224600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:9200000-9207200	Weak transcription	Gastric	stomach
17	chr11:9200000-9209200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:9200000-9225200	Weak transcription	Thymus	Thymus
19	chr11:9200200-9210600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:9200200-9224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:9200400-9207000	Weak transcription	Brain Anterior Caudate	brain
22	chr11:9200400-9216600	Weak transcription	Fetal Brain Male	brain
23	chr11:9200400-9223600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:9200400-9224200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:9200600-9208000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:9200600-9210400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:9200600-9210400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:9200600-9210400	Weak transcription	A549	lung
29	chr11:9200600-9210600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:9200600-9210600	Weak transcription	GM12878-XiMat	blood
31	chr11:9200600-9214400	Weak transcription	K562	blood
32	chr11:9200600-9224800	Weak transcription	Lung	lung
33	chr11:9200600-9224800	Weak transcription	Psoas Muscle	Psoas
34	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:9201000-9230800	Weak transcription	HMEC	breast
37	chr11:9201400-9208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:9202200-9210400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:9202400-9207000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:9202400-9210400	Weak transcription	Fetal Intestine Small	intestine
41	chr11:9202400-9210400	Weak transcription	Fetal Thymus	thymus
42	chr11:9202400-9210600	Weak transcription	Ovary	ovary
43	chr11:9202400-9214400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:9202400-9224600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:9202400-9225000	Weak transcription	NHEK	skin
46	chr11:9202600-9207000	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:9202600-9207000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:9202600-9209800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:9202600-9210600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr11:9202600-9210600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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