Variant report

Variant	rs11604198
Chromosome Location	chr11:9249749-9249750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11042260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042282	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11042294	0.87[AMR][1000 genomes]
rs1136330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11600093	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11600994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601190	0.93[EUR][1000 genomes]
rs11601229	0.96[EUR][1000 genomes]
rs11601340	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11601383	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11601789	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11603759	0.86[AMR][1000 genomes]
rs11604054	0.93[EUR][1000 genomes]
rs11604121	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11604607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11605358	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11605674	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11606260	0.85[EUR][1000 genomes]
rs11606740	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11606969	0.93[EUR][1000 genomes]
rs11607790	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11608223	1.00[AFR][1000 genomes]
rs16906708	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16914802	0.83[EUR][1000 genomes]
rs35347227	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs36005639	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4351820	0.86[EUR][1000 genomes]
rs4622264	0.83[EUR][1000 genomes]
rs4910036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910039	1.00[AMR][1000 genomes]
rs4910449	1.00[AFR][1000 genomes]
rs4910450	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4910456	1.00[AFR][1000 genomes]
rs55640358	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs55723890	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55741313	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55793943	0.93[AMR][1000 genomes]
rs55980718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55989000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55994936	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56002897	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56065481	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56081129	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56292930	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7394938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7395168	0.93[EUR][1000 genomes]
rs7395453	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7395754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7396336	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7396512	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9215	0.86[EUR][1000 genomes]
rs956516	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
2	chr11:9226000-9252000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:9226000-9252800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:9227400-9250400	Weak transcription	Fetal Stomach	stomach
5	chr11:9227600-9250600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:9230400-9253400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:9231000-9252200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:9231400-9250600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:9236000-9252200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:9236800-9250800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr11:9237000-9249800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:9237000-9249800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:9237000-9249800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:9237000-9249800	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:9237000-9250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:9237000-9250200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:9237000-9252200	Weak transcription	NHLF	lung
18	chr11:9237000-9252400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:9237000-9254000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:9237200-9251600	Weak transcription	Primary B cells from cord blood	blood
21	chr11:9237400-9252000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:9238000-9250400	Weak transcription	HepG2	liver
23	chr11:9238400-9249800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:9238600-9250600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:9240200-9252200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:9241400-9250200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:9241400-9254200	Weak transcription	HMEC	breast
28	chr11:9241600-9249800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:9241600-9250200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:9241600-9250400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:9241600-9250400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:9241800-9249800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:9241800-9250600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:9241800-9252800	Weak transcription	HSMM	muscle
35	chr11:9244600-9250400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:9244600-9251000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:9244600-9252600	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:9244600-9252600	Weak transcription	Fetal Brain Female	brain
39	chr11:9244800-9249800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:9244800-9250400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:9244800-9250400	Weak transcription	Psoas Muscle	Psoas
42	chr11:9245400-9252800	Weak transcription	Thymus	Thymus
43	chr11:9247000-9252400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:9247000-9252600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:9247200-9250400	Weak transcription	Right Ventricle	heart
46	chr11:9247400-9252400	Enhancers	Brain Hippocampus Middle	brain
47	chr11:9247600-9249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:9247600-9250000	Weak transcription	Left Ventricle	heart
49	chr11:9247600-9250400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:9247600-9252200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links