Variant report

Variant	rs4910456
Chromosome Location	chr11:9370093-9370094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9368708..9370210-chr11:9480305..9483007,2	K562	blood:
2	chr11:9367453..9371339-chr11:9383916..9387622,3	K562	blood:
3	chr11:9368736..9371339-chr11:9384685..9387958,4	K562	blood:

Variant related genes	Relation type
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11042242	0.85[CEU][hapmap]
rs11042260	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs11042282	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11042294	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1136330	1.00[AFR][1000 genomes]
rs11600994	1.00[AFR][1000 genomes]
rs11601229	1.00[CEU][hapmap]
rs11601789	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11604198	1.00[AFR][1000 genomes]
rs11604607	1.00[AFR][1000 genomes]
rs11605674	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11606740	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs35347227	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910036	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs4910038	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs4910043	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4910044	0.97[EUR][1000 genomes]
rs4910449	1.00[AFR][1000 genomes]
rs4910450	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55640358	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55793943	0.81[EUR][1000 genomes]
rs55989000	1.00[AFR][1000 genomes]
rs56081129	1.00[AFR][1000 genomes]
rs6486283	0.92[EUR][1000 genomes]
rs7115641	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7115750	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7394938	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7395754	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7396512	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv521969	chr11:9334961-9379005	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9368600-9370200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:9368600-9370600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:9368800-9370400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:9368800-9370400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:9369200-9370200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:9369200-9373000	Weak transcription	Fetal Heart	heart
7	chr11:9369600-9370400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9369600-9384000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:9369800-9370400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr11:9369800-9372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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