Variant report

Variant	rs11601229
Chromosome Location	chr11:9193571-9193572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10734643	0.82[AMR][1000 genomes]
rs10743101	0.82[AMR][1000 genomes]
rs11042242	0.85[CEU][hapmap]
rs11042260	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11042282	1.00[CEU][hapmap]
rs1136330	0.86[EUR][1000 genomes]
rs11600093	0.90[EUR][1000 genomes]
rs11600994	0.96[EUR][1000 genomes]
rs11601190	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11601340	0.86[EUR][1000 genomes]
rs11601383	0.86[EUR][1000 genomes]
rs11604054	0.90[EUR][1000 genomes]
rs11604121	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11604198	0.96[EUR][1000 genomes]
rs11604607	0.96[EUR][1000 genomes]
rs11605358	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11606260	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11606740	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11606969	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607790	0.90[EUR][1000 genomes]
rs16906708	0.85[EUR][1000 genomes]
rs16914802	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2016375	0.90[YRI][hapmap]
rs36005639	0.85[EUR][1000 genomes]
rs4351820	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4622264	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910036	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4910038	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4910441	0.88[CEU][hapmap]
rs4910450	1.00[CEU][hapmap]
rs4910456	1.00[CEU][hapmap]
rs55723890	0.90[EUR][1000 genomes]
rs55741313	0.90[EUR][1000 genomes]
rs55980718	0.96[EUR][1000 genomes]
rs55989000	0.93[EUR][1000 genomes]
rs55994936	0.90[EUR][1000 genomes]
rs56002897	0.86[EUR][1000 genomes]
rs56065481	0.85[EUR][1000 genomes]
rs56292930	0.90[EUR][1000 genomes]
rs57655359	0.80[AFR][1000 genomes]
rs58309260	0.99[AFR][1000 genomes]
rs59398820	0.86[AFR][1000 genomes]
rs59618374	0.82[AFR][1000 genomes]
rs60602151	0.99[AFR][1000 genomes]
rs61379640	0.99[AFR][1000 genomes]
rs61409427	0.81[AFR][1000 genomes]
rs7115641	1.00[CEU][hapmap]
rs7115750	0.88[CEU][hapmap]
rs7130037	0.95[YRI][hapmap]
rs73402323	0.99[AFR][1000 genomes]
rs73402339	0.93[AFR][1000 genomes]
rs73402346	0.90[AFR][1000 genomes]
rs7394938	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7395168	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7395453	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7395754	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7396336	0.93[EUR][1000 genomes]
rs7396512	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7944713	1.00[YRI][hapmap]
rs9215	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs956516	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9155000-9203400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9161200-9202400	Weak transcription	Small Intestine	intestine
3	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:9166000-9200600	Weak transcription	Colonic Mucosa	Colon
5	chr11:9169200-9198400	Weak transcription	Thymus	Thymus
6	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
7	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:9172200-9197800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:9172200-9199600	Weak transcription	Gastric	stomach
11	chr11:9173000-9199400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:9173400-9199600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:9173600-9199600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:9174000-9194800	Weak transcription	Fetal Kidney	kidney
15	chr11:9174000-9198200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:9174000-9199400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:9174000-9225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:9178200-9195400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:9180000-9199600	Weak transcription	Aorta	Aorta
20	chr11:9182400-9225000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:9182600-9198000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:9182600-9199000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:9182600-9199600	Weak transcription	Fetal Brain Male	brain
25	chr11:9183000-9195400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:9184000-9195200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:9184000-9195400	Strong transcription	Fetal Stomach	stomach
28	chr11:9184000-9195600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:9184200-9208200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:9184200-9216800	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:9186000-9195400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:9186000-9195400	Strong transcription	Adipose Nuclei	Adipose
33	chr11:9186800-9195400	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:9186800-9215800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:9187000-9195400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:9187200-9195000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:9187200-9195200	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:9187200-9197800	Weak transcription	Brain Germinal Matrix	brain
39	chr11:9187600-9201800	Weak transcription	Pancreas	Pancrea
40	chr11:9188800-9195000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:9189000-9195200	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:9189200-9195200	Strong transcription	Placenta	Placenta
43	chr11:9189400-9194200	Strong transcription	Primary T cells from cord blood	blood
44	chr11:9189400-9195200	Strong transcription	Primary B cells from cord blood	blood
45	chr11:9189800-9194200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:9190000-9198400	Weak transcription	Fetal Intestine Small	intestine
47	chr11:9190400-9193600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:9190400-9195400	Strong transcription	HepG2	liver
49	chr11:9190400-9197800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:9191000-9193800	Enhancers	Fetal Heart	heart

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