Variant report

Variant	rs4910073
Chromosome Location	chr11:9917620-9917621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10743120	0.92[ASN][1000 genomes]
rs10770070	0.88[ASN][1000 genomes]
rs10770073	0.96[ASN][1000 genomes]
rs10840316	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10840320	0.95[ASN][1000 genomes]
rs10840321	0.90[ASN][1000 genomes]
rs10840322	0.89[ASN][1000 genomes]
rs11042527	0.91[ASN][1000 genomes]
rs11042531	0.92[ASN][1000 genomes]
rs11042532	0.93[ASN][1000 genomes]
rs11042541	0.96[ASN][1000 genomes]
rs12362504	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365540	0.91[AFR][1000 genomes]
rs12796169	0.85[AFR][1000 genomes]
rs12800780	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2017503	0.84[EUR][1000 genomes]
rs35396321	0.86[AFR][1000 genomes]
rs35749184	0.84[EUR][1000 genomes]
rs4334006	0.91[AFR][1000 genomes]
rs4445629	0.88[AFR][1000 genomes]
rs4498988	0.86[AFR][1000 genomes]
rs4910067	0.88[EUR][1000 genomes]
rs4910074	0.85[ASN][1000 genomes]
rs4910076	0.85[AFR][1000 genomes]
rs55813311	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56138865	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56165961	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56981829	0.88[EUR][1000 genomes]
rs60975667	0.84[EUR][1000 genomes]
rs6483805	0.96[ASN][1000 genomes]
rs7122293	0.87[EUR][1000 genomes]
rs7126063	0.91[AFR][1000 genomes]
rs71463738	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7930281	0.85[AFR][1000 genomes]
rs7931062	0.92[ASN][1000 genomes]
rs7936793	0.98[ASN][1000 genomes]
rs7942326	0.87[EUR][1000 genomes]
rs7948688	0.85[AFR][1000 genomes]
rs7949582	0.88[ASN][1000 genomes]
rs7950839	0.88[EUR][1000 genomes]
rs9300099	0.96[ASN][1000 genomes]
rs9300100	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9332432	0.83[ASN][1000 genomes]
rs9919605	0.82[AFR][1000 genomes]
rs9919609	0.85[AFR][1000 genomes]
rs9919617	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
5	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:9906800-9920400	Weak transcription	HUVEC	blood vessel
7	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
8	chr11:9910200-9921000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:9911600-9919200	Weak transcription	Fetal Brain Female	brain
10	chr11:9911800-9921200	Weak transcription	HMEC	breast
11	chr11:9913400-9919800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:9913400-9921000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:9913600-9921200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
15	chr11:9913800-9927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:9914200-9926800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:9914400-9917800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:9914400-9927600	Weak transcription	Brain Anterior Caudate	brain
19	chr11:9915000-9918600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:9915000-9921000	Weak transcription	Hela-S3	cervix
21	chr11:9915000-9937200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:9915200-9922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:9915400-9921400	Weak transcription	NHLF	lung
24	chr11:9915400-9923200	Weak transcription	HSMMtube	muscle
25	chr11:9915400-9926800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:9915400-9927600	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:9915600-9921200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:9915600-9923400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:9915800-9923000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:9916200-9917800	Enhancers	NHDF-Ad	bronchial
31	chr11:9916400-9917800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr11:9916400-9918400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:9916600-9917800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr11:9916600-9917800	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:9916600-9917800	Enhancers	Osteobl	bone
36	chr11:9916600-9919000	Weak transcription	Fetal Stomach	stomach
37	chr11:9916600-9921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:9916600-9923000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:9916600-9925200	Weak transcription	Lung	lung
40	chr11:9916600-9932600	Weak transcription	Fetal Intestine Small	intestine
41	chr11:9916800-9917800	Enhancers	HSMM	muscle
42	chr11:9916800-9918200	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:9916800-9921000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:9916800-9921800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:9916800-9922800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:9916800-9923600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:9916800-9925000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:9916800-9944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:9916800-9944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:9917000-9917800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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