Variant report

Variant	rs4334006
Chromosome Location	chr11:9923276-9923277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10770072	0.94[ASN][1000 genomes]
rs10770074	0.88[ASN][1000 genomes]
rs10840316	0.91[AFR][1000 genomes]
rs12099354	0.87[EUR][1000 genomes]
rs12360818	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12365540	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365901	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12796169	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800780	0.87[AFR][1000 genomes]
rs1546541	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1546542	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35396321	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4445629	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4466826	0.83[ASN][1000 genomes]
rs4498988	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4616018	0.84[EUR][1000 genomes]
rs4910073	0.91[AFR][1000 genomes]
rs4910076	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6483809	0.98[ASN][1000 genomes]
rs6483811	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67701335	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105337	0.98[ASN][1000 genomes]
rs7107328	0.85[EUR][1000 genomes]
rs7126063	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7130923	0.94[ASN][1000 genomes]
rs7131516	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7350496	0.89[EUR][1000 genomes]
rs7925651	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7929338	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7930281	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948688	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950655	0.86[ASN][1000 genomes]
rs9919605	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9919608	0.93[ASN][1000 genomes]
rs9919609	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9919617	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9919633	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
4	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
6	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
7	chr11:9913800-9927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:9914200-9926800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:9914400-9927600	Weak transcription	Brain Anterior Caudate	brain
10	chr11:9915000-9937200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:9915400-9926800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:9915400-9927600	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:9915600-9923400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:9916600-9925200	Weak transcription	Lung	lung
15	chr11:9916600-9932600	Weak transcription	Fetal Intestine Small	intestine
16	chr11:9916800-9923600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:9916800-9925000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:9916800-9944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:9916800-9944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:9917000-9923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:9917000-9927600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:9917000-9937200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:9917200-9925000	Weak transcription	Ovary	ovary
24	chr11:9917200-9927400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:9917400-9928000	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:9917600-9924000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:9917600-9927200	Weak transcription	Fetal Intestine Large	intestine
28	chr11:9917600-9927600	Weak transcription	Fetal Lung	lung
29	chr11:9917600-9928200	Weak transcription	Liver	Liver
30	chr11:9917600-9928200	Weak transcription	Fetal Heart	heart
31	chr11:9917600-9933200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:9917600-9934200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:9917600-9951800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:9917600-9952400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:9917800-9926400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:9917800-9927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:9917800-9927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:9917800-9927600	Weak transcription	Adipose Nuclei	Adipose
39	chr11:9917800-9933200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:9917800-9952600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:9918400-9923400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:9920000-9933200	Weak transcription	Fetal Stomach	stomach
43	chr11:9920800-9925200	Weak transcription	HUVEC	blood vessel
44	chr11:9921400-9923600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:9921400-9934400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr11:9921600-9923800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:9921600-9926400	Weak transcription	NH-A	brain
48	chr11:9921800-9923400	Enhancers	Placenta	Placenta
49	chr11:9921800-9926200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:9921800-9926400	Weak transcription	HSMM	muscle

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