Variant report

Variant	rs7105337
Chromosome Location	chr11:9920537-9920538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9918384..9921801-chr11:9925480..9929741,5	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10770070	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs10770072	0.93[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10770073	0.87[LWK][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs10770074	1.00[CEU][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840320	0.91[AFR][1000 genomes]
rs10840321	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs11042527	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs11042541	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11042549	0.91[GIH][hapmap];0.91[JPT][hapmap]
rs12360818	0.86[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs12365540	0.94[ASN][1000 genomes]
rs12796169	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs35396321	0.81[ASN][1000 genomes]
rs4334006	0.98[ASN][1000 genomes]
rs4445629	0.81[ASN][1000 genomes]
rs4466826	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4498988	0.91[JPT][hapmap]
rs4616018	0.91[JPT][hapmap]
rs4910074	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs4910076	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4910082	0.91[JPT][hapmap]
rs4910083	0.89[GIH][hapmap];0.91[JPT][hapmap]
rs6483805	0.86[LWK][hapmap];0.84[AFR][1000 genomes]
rs6483809	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483811	0.88[ASN][1000 genomes]
rs7102482	0.91[JPT][hapmap]
rs7125054	0.91[JPT][hapmap]
rs7126063	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7130681	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap]
rs7130923	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7925651	0.89[ASN][1000 genomes]
rs7930281	0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7931062	0.82[LWK][hapmap];0.82[AFR][1000 genomes]
rs7936793	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs7948688	0.98[ASN][1000 genomes]
rs7949582	0.91[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs7950655	0.87[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.96[MEX][hapmap];0.80[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9300099	0.89[AFR][1000 genomes]
rs9919605	0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9919608	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9919609	0.94[ASN][1000 genomes]
rs9919617	0.94[ASN][1000 genomes]
rs9919633	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7105337	ILK	cis	cerebellum	SCAN
rs7105337	OR10A4	cis	cerebellum	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
5	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
7	chr11:9910200-9921000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:9911800-9921200	Weak transcription	HMEC	breast
9	chr11:9913400-9921000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:9913600-9921200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
12	chr11:9913800-9927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:9914200-9926800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:9914400-9927600	Weak transcription	Brain Anterior Caudate	brain
15	chr11:9915000-9921000	Weak transcription	Hela-S3	cervix
16	chr11:9915000-9937200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:9915200-9922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:9915400-9921400	Weak transcription	NHLF	lung
19	chr11:9915400-9923200	Weak transcription	HSMMtube	muscle
20	chr11:9915400-9926800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:9915400-9927600	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:9915600-9921200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:9915600-9923400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:9915800-9923000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:9916600-9921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:9916600-9923000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:9916600-9925200	Weak transcription	Lung	lung
28	chr11:9916600-9932600	Weak transcription	Fetal Intestine Small	intestine
29	chr11:9916800-9921000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:9916800-9921800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:9916800-9922800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:9916800-9923600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:9916800-9925000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:9916800-9944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:9916800-9944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:9917000-9923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:9917000-9927600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:9917000-9937200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr11:9917200-9922800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:9917200-9923000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:9917200-9925000	Weak transcription	Ovary	ovary
42	chr11:9917200-9927400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:9917400-9921200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:9917400-9921200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:9917400-9921200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:9917400-9921800	Weak transcription	Placenta	Placenta
47	chr11:9917400-9928000	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:9917600-9920600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:9917600-9921200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:9917600-9921200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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