Variant report

Variant	rs7950839
Chromosome Location	chr11:9888853-9888854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9780076..9783440-chr11:9887895..9890537,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245522	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10840316	0.88[EUR][1000 genomes]
rs11042519	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12362504	0.88[EUR][1000 genomes]
rs12365901	0.81[AFR][1000 genomes]
rs12800780	0.88[EUR][1000 genomes]
rs2017503	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35749184	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4910067	0.94[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4910073	0.88[EUR][1000 genomes]
rs55813311	0.87[EUR][1000 genomes]
rs56138865	0.87[EUR][1000 genomes]
rs56981829	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60975667	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7122293	0.84[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7131516	0.84[AFR][1000 genomes]
rs7942326	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9300100	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9877600-9890200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:9877800-9897000	Weak transcription	Psoas Muscle	Psoas
3	chr11:9878200-9892000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:9878200-9897000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:9878400-9891800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:9878400-9893200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
9	chr11:9880000-9891600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:9880200-9913200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:9880600-9892200	Weak transcription	Fetal Stomach	stomach
12	chr11:9880600-9893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:9880600-9896400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:9880600-9897200	Weak transcription	Ovary	ovary
15	chr11:9880600-9914800	Weak transcription	Placenta	Placenta
16	chr11:9880800-9892000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:9880800-9902200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:9881000-9892000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:9881800-9893600	Weak transcription	Adipose Nuclei	Adipose
20	chr11:9881800-9893600	Weak transcription	Fetal Lung	lung
21	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
22	chr11:9883800-9896200	Weak transcription	HSMMtube	muscle
23	chr11:9884200-9896800	Weak transcription	HSMM	muscle
24	chr11:9884800-9905400	Weak transcription	NHLF	lung
25	chr11:9885000-9895800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:9885200-9890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:9885200-9890200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:9885200-9897000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:9885600-9900400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:9885800-9891800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:9885800-9896200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:9885800-9905600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:9886000-9890200	Weak transcription	NHDF-Ad	bronchial
34	chr11:9886000-9893200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:9886200-9893600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:9887400-9894200	Weak transcription	Left Ventricle	heart
37	chr11:9888800-9889000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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