Variant report

Variant	rs4910139
Chromosome Location	chr11:10470887-10470888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10470733..10474944-chr11:10476648..10480616,5	MCF-7	breast:
2	chr11:10469398..10472547-chr11:10473380..10477623,4	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10840411	0.83[EUR][1000 genomes]
rs11042791	0.81[EUR][1000 genomes]
rs11042792	0.83[EUR][1000 genomes]
rs28403593	0.87[ASN][1000 genomes]
rs55634501	0.84[ASN][1000 genomes]
rs55931228	0.84[ASN][1000 genomes]
rs60628971	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61890322	0.80[ASN][1000 genomes]
rs6484256	0.82[EUR][1000 genomes]
rs6484260	0.81[EUR][1000 genomes]
rs72856184	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10465400-10471000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:10465600-10472000	Weak transcription	Right Atrium	heart
7	chr11:10466600-10471400	Weak transcription	Spleen	Spleen
8	chr11:10466800-10471200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:10467200-10471200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:10467200-10471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:10467400-10471000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:10467400-10471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:10467400-10471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:10467400-10471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:10467400-10471400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:10467400-10471600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:10467600-10471000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:10467600-10471200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:10467600-10471200	Weak transcription	Fetal Thymus	thymus
24	chr11:10469200-10471000	Weak transcription	Primary T cells from cord blood	blood
25	chr11:10469200-10471200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:10469800-10471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:10469800-10471400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:10470000-10471000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:10470000-10471200	Weak transcription	Pancreas	Pancrea
30	chr11:10470800-10471000	Enhancers	Pancreatic Islets	Pancreatic Islet

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