Variant report

Variant	rs6484256
Chromosome Location	chr11:10436441-10436442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10433858..10436750-chr11:10437236..10438791,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10840411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042786	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11042791	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042792	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377303	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741045	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4910139	0.82[EUR][1000 genomes]
rs57259436	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60391641	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60628971	0.83[ASN][1000 genomes]
rs61616419	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890317	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890319	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890322	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61890323	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890325	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484260	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67457110	1.00[ASN][1000 genomes]
rs72856128	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72856156	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481363	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763470	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
2	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
3	chr11:10434400-10436800	Weak transcription	NHEK	skin
4	chr11:10434400-10438400	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:10434600-10437000	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:10434600-10437000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:10434600-10437200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:10434600-10437800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:10434600-10438400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:10434800-10436800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:10434800-10437600	Enhancers	Adipose Nuclei	Adipose
12	chr11:10435000-10436600	Enhancers	Primary B cells from cord blood	blood
13	chr11:10435000-10436600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:10435000-10437000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:10435000-10437000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:10435000-10437000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:10435000-10437200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr11:10435000-10437200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:10435000-10437200	Enhancers	Fetal Thymus	thymus
20	chr11:10435200-10436600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr11:10435200-10436600	Enhancers	NHDF-Ad	bronchial
22	chr11:10435200-10436600	Enhancers	Osteobl	bone
23	chr11:10435200-10437000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:10435200-10437000	Enhancers	Thymus	Thymus
25	chr11:10435200-10437200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:10435200-10437200	Enhancers	Dnd41	blood
27	chr11:10435200-10437400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:10435400-10436600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:10435400-10436600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr11:10435400-10436600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:10435400-10436800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:10435400-10436800	Enhancers	HUVEC	blood vessel
33	chr11:10435400-10437000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:10435400-10437000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:10435400-10437600	Enhancers	Duodenum Mucosa	Duodenum
36	chr11:10435400-10437600	Enhancers	Fetal Muscle Leg	muscle
37	chr11:10435400-10438400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr11:10435600-10436800	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:10435600-10437000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr11:10435600-10437200	Enhancers	Spleen	Spleen
41	chr11:10435600-10437400	Enhancers	K562	blood
42	chr11:10435800-10436600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr11:10435800-10437200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:10435800-10437400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr11:10436000-10436800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr11:10436000-10437000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:10436000-10437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:10436000-10437200	Enhancers	Colon Smooth Muscle	Colon
49	chr11:10436000-10437200	Weak transcription	Placenta	Placenta
50	chr11:10436000-10438800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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