Variant report

Variant	rs3741045
Chromosome Location	chr11:10432335-10432336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10432214..10434068-chr11:10476059..10477967,2	K562	blood:
2	chr11:10430515..10432971-chr11:10830663..10832576,2	K562	blood:
3	chr11:10430604..10432437-chr11:10665017..10667381,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMPD3-2	chr11:10432304-10432523	NONHSAT017961
2	lnc-AMPD3-2	chr11:10432305-10432385	NONHSAT017964
3	lnc-AMPD3-2	chr11:10432304-10432385	NONHSAT017965
4	lnc-AMPD3-2	chr11:10432304-10432369	NONHSAT017967
5	lnc-AMPD3-2	chr11:10432304-10432385	NONHSAT140012
6	lnc-AMPD3-2	chr11:10432304-10432385	NONHSAT017963

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10840411	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11042791	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042792	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13377303	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57259436	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60391641	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60628971	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61616419	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61890317	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61890319	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61890322	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61890323	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61890325	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484256	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6484260	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67457110	0.97[ASN][1000 genomes]
rs72856128	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72856156	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72856184	0.81[AMR][1000 genomes]
rs7481363	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs763470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10427200-10432600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr11:10427400-10432400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:10427400-10432800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:10427600-10432800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:10427800-10435000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:10427800-10435200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
9	chr11:10428200-10435200	Weak transcription	Dnd41	blood
10	chr11:10429000-10432600	Weak transcription	Brain Substantia Nigra	brain
11	chr11:10429000-10434000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10429000-10436000	Enhancers	Placenta	Placenta
13	chr11:10429800-10432600	Weak transcription	Esophagus	oesophagus
14	chr11:10429800-10433800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10429800-10433800	Weak transcription	NHEK	skin
16	chr11:10429800-10435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:10429800-10435400	Weak transcription	Left Ventricle	heart
18	chr11:10429800-10436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:10430000-10435200	Weak transcription	NHDF-Ad	bronchial
20	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
21	chr11:10430200-10432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:10430400-10432400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:10430400-10432400	Enhancers	Primary hematopoietic stem cells	blood
24	chr11:10430400-10432800	Enhancers	Psoas Muscle	Psoas
25	chr11:10430600-10432800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:10431200-10432400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:10431200-10434800	Weak transcription	Adipose Nuclei	Adipose
28	chr11:10431200-10435400	Weak transcription	HUVEC	blood vessel
29	chr11:10431200-10435600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:10431200-10435600	Weak transcription	Spleen	Spleen
31	chr11:10431200-10436000	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:10431200-10436200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:10431400-10432600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:10431400-10433000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:10431400-10433200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:10431400-10435000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:10431400-10435000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:10431400-10435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:10431400-10435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:10431400-10435400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:10431400-10435800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:10431600-10434600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr11:10431600-10434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:10431600-10434800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr11:10431600-10435000	Weak transcription	Primary B cells from cord blood	blood
46	chr11:10431600-10435000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:10431600-10435000	Weak transcription	Fetal Thymus	thymus
48	chr11:10431600-10435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:10431800-10432800	Enhancers	K562	blood
50	chr11:10431800-10434600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links