Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:10449957..10452068-chr11:10456284..10457887,2	MCF-7	breast:
2	chr11:10451018..10453193-chr11:10462043..10463802,2	K562	blood:
3	chr11:10450631..10452382-chr11:10561026..10563788,2	K562	blood:
4	chr11:10451247..10453036-chr11:10736394..10738318,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AMPD3-2	chr11:10451923-10452220	NONHSAT017961

Variant related genes	Relation type
ENSG00000177112	Chromatin interaction
ENSG00000110315	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10840411	0.97[ASN][1000 genomes]
rs11042786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11042791	0.98[ASN][1000 genomes]
rs11042792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13377303	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3741045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs57259436	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60391641	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60628971	0.85[ASN][1000 genomes]
rs61616419	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61890317	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61890319	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61890322	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61890323	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61890325	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6484256	0.98[ASN][1000 genomes]
rs6484260	0.89[ASN][1000 genomes]
rs67457110	0.98[ASN][1000 genomes]
rs72856128	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72856156	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7481363	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10448600-10460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10449400-10456000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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