Variant report

Variant	rs11042791
Chromosome Location	chr11:10435985-10435986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10433858..10436750-chr11:10437236..10438791,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10840411	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11042786	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11042792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13377303	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741045	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4910139	0.81[EUR][1000 genomes]
rs57259436	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60391641	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60628971	0.83[ASN][1000 genomes]
rs61616419	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890317	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61890319	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890322	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61890323	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61890325	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484256	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484260	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67457110	1.00[ASN][1000 genomes]
rs72856128	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72856156	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481363	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
3	chr11:10429000-10436000	Enhancers	Placenta	Placenta
4	chr11:10429800-10436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
6	chr11:10431200-10436000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:10431200-10436200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
9	chr11:10434400-10436800	Weak transcription	NHEK	skin
10	chr11:10434400-10438400	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:10434600-10436000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:10434600-10437000	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:10434600-10437000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr11:10434600-10437200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:10434600-10437800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:10434600-10438400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:10434800-10436000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:10434800-10436800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:10434800-10437600	Enhancers	Adipose Nuclei	Adipose
20	chr11:10435000-10436000	Enhancers	Primary T cells from cord blood	blood
21	chr11:10435000-10436000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr11:10435000-10436600	Enhancers	Primary B cells from cord blood	blood
23	chr11:10435000-10436600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:10435000-10437000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:10435000-10437000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:10435000-10437000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:10435000-10437200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr11:10435000-10437200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:10435000-10437200	Enhancers	Fetal Thymus	thymus
30	chr11:10435200-10436600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:10435200-10436600	Enhancers	NHDF-Ad	bronchial
32	chr11:10435200-10436600	Enhancers	Osteobl	bone
33	chr11:10435200-10437000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:10435200-10437000	Enhancers	Thymus	Thymus
35	chr11:10435200-10437200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:10435200-10437200	Enhancers	Dnd41	blood
37	chr11:10435200-10437400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:10435400-10436000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:10435400-10436000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:10435400-10436000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:10435400-10436000	Enhancers	Liver	Liver
42	chr11:10435400-10436200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr11:10435400-10436400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:10435400-10436400	Enhancers	GM12878-XiMat	blood
45	chr11:10435400-10436600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:10435400-10436600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr11:10435400-10436600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:10435400-10436800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:10435400-10436800	Enhancers	HUVEC	blood vessel
50	chr11:10435400-10437000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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