Variant report

Variant	rs4910710
Chromosome Location	chr11:3770652-3770653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3769093..3770823-chr11:3816155..3819010,2	K562	blood:

Variant related genes	Relation type
ENSG00000148985	Chromatin interaction
ENSG00000110713	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12294799	1.00[ASN][1000 genomes]
rs1567923	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16929762	0.98[EUR][1000 genomes]
rs16929785	0.94[EUR][1000 genomes]
rs35803045	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910530	0.85[EUR][1000 genomes]
rs4910549	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4910565	0.98[EUR][1000 genomes]
rs4910654	0.93[EUR][1000 genomes]
rs4910665	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910695	0.94[EUR][1000 genomes]
rs4910711	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4910712	0.98[EUR][1000 genomes]
rs4910797	0.98[EUR][1000 genomes]
rs4910798	0.98[EUR][1000 genomes]
rs4910799	0.98[EUR][1000 genomes]
rs4910800	0.98[EUR][1000 genomes]
rs4910805	0.98[EUR][1000 genomes]
rs4910806	0.98[EUR][1000 genomes]
rs4910808	0.98[EUR][1000 genomes]
rs4910810	0.98[EUR][1000 genomes]
rs4910811	0.98[EUR][1000 genomes]
rs56702085	0.98[EUR][1000 genomes]
rs59617039	0.88[EUR][1000 genomes]
rs60726516	0.96[EUR][1000 genomes]
rs61508984	0.98[EUR][1000 genomes]
rs61751339	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877577	0.85[EUR][1000 genomes]
rs61877578	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877579	0.87[EUR][1000 genomes]
rs61877580	0.85[EUR][1000 genomes]
rs61877581	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877582	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877583	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877584	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877592	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877594	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877595	0.94[EUR][1000 genomes]
rs61877596	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877597	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61877598	0.98[EUR][1000 genomes]
rs61877601	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877602	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877604	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877626	0.98[EUR][1000 genomes]
rs61877627	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877628	0.98[EUR][1000 genomes]
rs61877629	0.98[EUR][1000 genomes]
rs61877630	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877631	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877632	0.98[EUR][1000 genomes]
rs61879797	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879798	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879799	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879800	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879801	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879830	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879831	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879832	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879982	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879984	0.93[EUR][1000 genomes]
rs61896888	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896889	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896890	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896891	0.98[EUR][1000 genomes]
rs61896892	0.98[EUR][1000 genomes]
rs61896893	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896894	0.96[EUR][1000 genomes]
rs61896897	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896898	0.96[EUR][1000 genomes]
rs61896899	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61896900	0.93[EUR][1000 genomes]
rs61896901	0.93[EUR][1000 genomes]
rs61896917	0.98[EUR][1000 genomes]
rs61896918	0.98[EUR][1000 genomes]
rs61896919	0.98[EUR][1000 genomes]
rs61896920	0.98[EUR][1000 genomes]
rs61896921	0.98[EUR][1000 genomes]
rs61896922	0.98[EUR][1000 genomes]
rs61896923	0.98[EUR][1000 genomes]
rs61896925	0.96[EUR][1000 genomes]
rs7118870	0.98[EUR][1000 genomes]
rs7122294	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758252	chr11:3236512-3801429	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2759796	chr11:3236512-3801429	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv1820972	chr11:3616884-3801429	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1821329	chr11:3616884-3801429	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv832052	chr11:3616884-3801429	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv428247	chr11:3616884-3801429	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1046356	chr11:3628837-3774215	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv896893	chr11:3737398-3781601	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3685400-3802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:3685600-3805600	Strong transcription	Fetal Thymus	thymus
3	chr11:3685800-3776200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr11:3685800-3779800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:3686000-3779800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:3686600-3802600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:3687000-3805600	Strong transcription	Dnd41	blood
8	chr11:3687600-3802200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:3687600-3802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:3687800-3801400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:3696200-3779800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:3705800-3802400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:3719000-3779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:3720000-3803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:3722000-3802400	Strong transcription	Fetal Stomach	stomach
16	chr11:3731200-3779800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:3731600-3802200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr11:3732000-3779800	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:3732200-3779800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:3732200-3803400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:3732400-3804400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:3732400-3808000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:3732600-3803600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:3733600-3803600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:3734000-3803000	Strong transcription	Fetal Intestine Large	intestine
26	chr11:3738600-3772800	Weak transcription	Psoas Muscle	Psoas
27	chr11:3739400-3817600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:3739800-3803000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:3742400-3802600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:3744600-3772600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:3749200-3785200	Weak transcription	Stomach Mucosa	stomach
32	chr11:3749600-3771400	Weak transcription	Esophagus	oesophagus
33	chr11:3749600-3779800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:3749600-3780000	Weak transcription	Fetal Heart	heart
35	chr11:3752200-3771200	Weak transcription	Gastric	stomach
36	chr11:3754200-3803000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:3754600-3802600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:3756200-3772600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:3757600-3771400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:3757800-3771400	Weak transcription	Pancreas	Pancrea
41	chr11:3759400-3777800	Strong transcription	Hela-S3	cervix
42	chr11:3759600-3797400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr11:3759600-3802400	Strong transcription	Fetal Muscle Leg	muscle
44	chr11:3759600-3802600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:3760200-3774000	Strong transcription	Liver	Liver
46	chr11:3760200-3800600	Strong transcription	Adipose Nuclei	Adipose
47	chr11:3760400-3774400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:3760800-3802200	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:3761800-3775200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:3762000-3772800	Weak transcription	Small Intestine	intestine

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