Variant report

Variant	rs61877582
Chromosome Location	chr11:3754568-3754569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs12269960	1.00[ASN][1000 genomes]
rs12271649	1.00[ASN][1000 genomes]
rs12277623	1.00[ASN][1000 genomes]
rs12277783	1.00[ASN][1000 genomes]
rs12282367	1.00[ASN][1000 genomes]
rs12284297	1.00[ASN][1000 genomes]
rs12285688	1.00[ASN][1000 genomes]
rs12293671	1.00[ASN][1000 genomes]
rs12295219	1.00[ASN][1000 genomes]
rs1567923	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16925377	1.00[ASN][1000 genomes]
rs16929762	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929785	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2231546	1.00[ASN][1000 genomes]
rs2231547	1.00[ASN][1000 genomes]
rs35404087	1.00[ASN][1000 genomes]
rs35803045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910530	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910549	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910565	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910639	1.00[ASN][1000 genomes]
rs4910654	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910695	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910710	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4910711	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910712	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910797	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910798	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910799	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910805	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910806	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910808	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910810	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910811	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910814	1.00[ASN][1000 genomes]
rs55798582	1.00[ASN][1000 genomes]
rs56702085	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59617039	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60726516	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508984	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61751339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877577	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877579	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877580	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61877598	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877601	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877602	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61877604	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877626	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877627	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877628	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877629	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877630	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877631	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61877632	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61878509	1.00[ASN][1000 genomes]
rs61878531	1.00[ASN][1000 genomes]
rs61878539	1.00[ASN][1000 genomes]
rs61878540	1.00[ASN][1000 genomes]
rs61878542	1.00[ASN][1000 genomes]
rs61878543	1.00[ASN][1000 genomes]
rs61878551	1.00[ASN][1000 genomes]
rs61878553	1.00[ASN][1000 genomes]
rs61878554	1.00[ASN][1000 genomes]
rs61878555	1.00[ASN][1000 genomes]
rs61878556	1.00[ASN][1000 genomes]
rs61879789	1.00[ASN][1000 genomes]
rs61879790	1.00[ASN][1000 genomes]
rs61879791	1.00[ASN][1000 genomes]
rs61879792	1.00[ASN][1000 genomes]
rs61879795	1.00[ASN][1000 genomes]
rs61879797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879984	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896888	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896889	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896890	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896891	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896892	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896893	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896894	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61896897	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896898	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61896899	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61896900	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61896901	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61896917	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896918	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896919	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896920	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896921	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896922	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896923	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896925	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61998205	1.00[ASN][1000 genomes]
rs7105207	1.00[ASN][1000 genomes]
rs7111156	1.00[ASN][1000 genomes]
rs7118870	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122294	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844330	1.00[ASN][1000 genomes]
rs72844332	1.00[ASN][1000 genomes]
rs72844335	1.00[ASN][1000 genomes]
rs72844387	1.00[ASN][1000 genomes]
rs72844389	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758252	chr11:3236512-3801429	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2759796	chr11:3236512-3801429	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv1820972	chr11:3616884-3801429	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1821329	chr11:3616884-3801429	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv832052	chr11:3616884-3801429	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv428247	chr11:3616884-3801429	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv526441	chr11:3626177-3756686	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv1046356	chr11:3628837-3774215	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv896893	chr11:3737398-3781601	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3685200-3766800	Strong transcription	Placenta	Placenta
2	chr11:3685400-3802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:3685600-3805600	Strong transcription	Fetal Thymus	thymus
4	chr11:3685800-3776200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr11:3685800-3779800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:3686000-3779800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:3686600-3802600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:3686800-3757400	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:3687000-3805600	Strong transcription	Dnd41	blood
10	chr11:3687200-3767000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:3687600-3802200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:3687600-3802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:3687800-3801400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:3696200-3779800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:3696800-3766800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:3705800-3802400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr11:3706200-3757800	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:3707400-3758000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:3719000-3779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:3719800-3758000	Strong transcription	Primary T cells from cord blood	blood
21	chr11:3720000-3803000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:3722000-3802400	Strong transcription	Fetal Stomach	stomach
23	chr11:3729000-3757800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:3729400-3758200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:3729800-3757200	Strong transcription	Fetal Brain Female	brain
26	chr11:3731200-3779800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:3731400-3756200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:3731600-3802200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:3732000-3779800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:3732200-3779800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:3732200-3803400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:3732400-3804400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:3732400-3808000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:3732600-3803600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:3733400-3757800	Strong transcription	Adipose Nuclei	Adipose
36	chr11:3733600-3803600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:3734000-3767000	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:3734000-3803000	Strong transcription	Fetal Intestine Large	intestine
39	chr11:3738600-3772800	Weak transcription	Psoas Muscle	Psoas
40	chr11:3739400-3817600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:3739800-3803000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:3742000-3757800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr11:3742400-3802600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:3743000-3757400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:3744600-3769600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:3744600-3772600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:3744800-3754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:3744800-3759400	Strong transcription	HSMM	muscle
49	chr11:3745200-3756400	Strong transcription	NH-A	brain
50	chr11:3745600-3759000	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links