Variant report

Variant	rs61896901
Chromosome Location	chr11:3805217-3805218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1567923	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929762	0.95[EUR][1000 genomes]
rs16929785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35803045	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910530	0.82[EUR][1000 genomes]
rs4910549	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910565	0.95[EUR][1000 genomes]
rs4910654	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4910665	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910695	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4910710	0.93[EUR][1000 genomes]
rs4910711	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4910712	0.95[EUR][1000 genomes]
rs4910797	0.95[EUR][1000 genomes]
rs4910798	0.95[EUR][1000 genomes]
rs4910799	0.95[EUR][1000 genomes]
rs4910800	0.95[EUR][1000 genomes]
rs4910805	0.95[EUR][1000 genomes]
rs4910806	0.95[EUR][1000 genomes]
rs4910808	0.95[EUR][1000 genomes]
rs4910810	0.95[EUR][1000 genomes]
rs4910811	0.95[EUR][1000 genomes]
rs56702085	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59617039	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60726516	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61508984	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61751339	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877577	0.82[EUR][1000 genomes]
rs61877578	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877579	0.84[EUR][1000 genomes]
rs61877580	0.82[EUR][1000 genomes]
rs61877581	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877582	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877583	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877584	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877592	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877594	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877595	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877596	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877597	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61877598	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877601	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877602	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61877604	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877626	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877627	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877628	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61877629	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877630	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877631	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877632	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879797	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879798	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879799	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879800	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879801	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879830	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879831	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879832	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879982	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61879984	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61896888	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896889	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61896890	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896891	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896892	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896893	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896894	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896897	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896898	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896899	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896900	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896917	0.95[EUR][1000 genomes]
rs61896918	0.95[EUR][1000 genomes]
rs61896919	0.95[EUR][1000 genomes]
rs61896920	0.95[EUR][1000 genomes]
rs61896921	0.95[EUR][1000 genomes]
rs61896922	0.95[EUR][1000 genomes]
rs61896923	0.95[EUR][1000 genomes]
rs61896925	0.93[EUR][1000 genomes]
rs7118870	0.95[EUR][1000 genomes]
rs7122294	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3685600-3805600	Strong transcription	Fetal Thymus	thymus
2	chr11:3687000-3805600	Strong transcription	Dnd41	blood
3	chr11:3732400-3808000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:3739400-3817600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:3780200-3808000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:3780600-3817000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:3786800-3816000	Weak transcription	Stomach Mucosa	stomach
8	chr11:3791200-3813200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:3793800-3816800	Weak transcription	Fetal Heart	heart
10	chr11:3793800-3817000	Weak transcription	Fetal Brain Male	brain
11	chr11:3800000-3808400	Weak transcription	Psoas Muscle	Psoas
12	chr11:3800400-3806400	Weak transcription	Brain Substantia Nigra	brain
13	chr11:3800400-3806600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:3800400-3806600	Weak transcription	Gastric	stomach
15	chr11:3800400-3806600	Weak transcription	Spleen	Spleen
16	chr11:3800400-3807200	Weak transcription	Brain Angular Gyrus	brain
17	chr11:3800400-3807200	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:3800400-3807400	Weak transcription	NH-A	brain
19	chr11:3800400-3808400	Weak transcription	Pancreas	Pancrea
20	chr11:3800400-3812800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:3800400-3813200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:3800400-3813400	Weak transcription	Fetal Kidney	kidney
23	chr11:3800400-3816400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:3800400-3816400	Weak transcription	Small Intestine	intestine
25	chr11:3800400-3817000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:3800400-3817600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:3800600-3805400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:3800600-3807800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:3800600-3807800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:3800600-3813400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:3800600-3816400	Weak transcription	Colonic Mucosa	Colon
32	chr11:3800600-3817000	Weak transcription	HSMMtube	muscle
33	chr11:3800600-3817200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:3800800-3808400	Weak transcription	Right Ventricle	heart
35	chr11:3801000-3807800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:3801200-3808000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:3801400-3812800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:3801600-3813800	Weak transcription	Fetal Brain Female	brain
39	chr11:3801800-3810400	Enhancers	Primary hematopoietic stem cells	blood
40	chr11:3802000-3807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:3802200-3813200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:3802400-3805600	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr11:3802400-3805600	Weak transcription	Fetal Lung	lung
44	chr11:3802400-3806400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:3802400-3806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:3802400-3807400	Weak transcription	Adipose Nuclei	Adipose
47	chr11:3802400-3808200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:3802400-3808400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:3802400-3808400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:3802400-3808400	Weak transcription	Placenta	Placenta

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