Variant report

Variant	rs4910759
Chromosome Location	chr11:5374222-5374223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10768886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10768896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10768899	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10768919	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11037193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11037196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11037417	0.85[CHB][hapmap]
rs12575572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577634	0.91[EUR][1000 genomes]
rs1546216	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs16930536	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1846318	0.83[JPT][hapmap]
rs2340326	0.81[CHB][hapmap]
rs2647546	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2647549	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2647557	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2723372	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2723373	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2736536	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs36031733	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4243955	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910773	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs5024041	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs58114066	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58283839	0.91[EUR][1000 genomes]
rs60075439	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60758087	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61894081	0.87[EUR][1000 genomes]
rs61894102	0.91[EUR][1000 genomes]
rs61894103	0.91[EUR][1000 genomes]
rs61894104	0.91[EUR][1000 genomes]
rs61894105	0.91[EUR][1000 genomes]
rs61894106	0.91[EUR][1000 genomes]
rs61894107	0.91[EUR][1000 genomes]
rs6421051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578627	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6578629	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578635	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578636	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578639	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6578640	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7116499	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7478845	0.84[ASN][1000 genomes]
rs7479379	0.84[ASN][1000 genomes]
rs7479757	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7482183	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7483217	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv18780	chr11:5372010-5384809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1829102	chr11:5373646-5383453	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5365600-5382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:5370200-5376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:5373000-5376800	Strong transcription	K562	blood

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