Variant report

Variant	rs4243955
Chromosome Location	chr11:5372040-5372041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5365752..5367292-chr11:5371072..5372719,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10500638	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10768886	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10768896	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10768899	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10768919	0.87[EUR][1000 genomes]
rs11037193	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11037196	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12575572	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12577634	0.87[EUR][1000 genomes]
rs16930536	0.87[EUR][1000 genomes]
rs2340655	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs36031733	0.87[EUR][1000 genomes]
rs4910759	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58114066	0.87[EUR][1000 genomes]
rs58283839	0.87[EUR][1000 genomes]
rs60075439	0.87[EUR][1000 genomes]
rs60758087	0.87[EUR][1000 genomes]
rs61894081	0.83[EUR][1000 genomes]
rs61894102	0.87[EUR][1000 genomes]
rs61894103	0.87[EUR][1000 genomes]
rs61894104	0.87[EUR][1000 genomes]
rs61894105	0.87[EUR][1000 genomes]
rs61894106	0.87[EUR][1000 genomes]
rs61894107	0.87[EUR][1000 genomes]
rs6421051	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6578627	0.87[EUR][1000 genomes]
rs6578629	0.87[EUR][1000 genomes]
rs6578634	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6578635	0.87[EUR][1000 genomes]
rs6578636	0.87[EUR][1000 genomes]
rs6578637	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6578638	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6578639	0.87[EUR][1000 genomes]
rs6578640	0.87[EUR][1000 genomes]
rs7113335	0.85[JPT][hapmap]
rs7479757	0.80[EUR][1000 genomes]
rs7482183	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7483217	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv18780	chr11:5372010-5384809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5365600-5382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:5370200-5372800	Weak transcription	K562	blood
3	chr11:5370200-5376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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