Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:5370370-5370534	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:5369590..5371367-chr11:5374637..5376973,2	K562	blood:

Variant related genes	Relation type
OR51B6	TF binding region
ENSG00000230087	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10500638	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12802177	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1546216	0.95[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1846318	0.83[EUR][1000 genomes]
rs2340655	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2647546	0.95[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs2647549	0.95[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs2647557	0.96[CEU][hapmap];0.80[JPT][hapmap]
rs2647610	0.91[CEU][hapmap]
rs2723372	0.95[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs2723373	0.96[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs2723379	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2736530	0.91[CEU][hapmap]
rs2736533	0.86[CEU][hapmap]
rs2736534	0.86[CEU][hapmap]
rs2736536	0.96[CEU][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs2736542	0.91[CEU][hapmap]
rs4243955	0.85[JPT][hapmap]
rs4910769	0.83[CEU][hapmap]
rs4910773	0.87[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs5006888	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5024041	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7116499	0.95[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5365600-5382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:5367600-5371000	Weak transcription	Osteobl	bone
3	chr11:5369600-5371000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:5369800-5370600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:5369800-5370600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:5370000-5370800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:5370200-5372800	Weak transcription	K562	blood
8	chr11:5370200-5376000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:5370400-5370600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:5370400-5371000	Enhancers	HUES48 Cell Line	embryonic stem cell

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