Variant report

Variant	rs4918000
Chromosome Location	chr10:94837743-94837744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17108155	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17108162	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35800823	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61863117	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7905501	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7905939	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94834200-94838200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:94835400-94840600	Enhancers	Liver	Liver
3	chr10:94836200-94839600	Enhancers	A549	lung
4	chr10:94836400-94837800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:94836400-94840000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:94837000-94837800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:94837000-94839600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:94837200-94838200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:94837600-94837800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr10:94837600-94837800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:94837600-94838200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:94837600-94838200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:94837600-94838200	Bivalent Enhancer	Fetal Lung	lung
14	chr10:94837600-94838400	Enhancers	Adipose Nuclei	Adipose
15	chr10:94837600-94838400	Enhancers	K562	blood
16	chr10:94837600-94838600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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