Variant report

Variant	rs7905501
Chromosome Location	chr10:94840716-94840717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11595537	0.80[EUR][1000 genomes]
rs17108155	0.95[ASN][1000 genomes]
rs17108162	0.95[ASN][1000 genomes]
rs17465590	0.88[CEU][hapmap]
rs35451331	0.82[EUR][1000 genomes]
rs35668759	0.84[EUR][1000 genomes]
rs35800823	0.95[ASN][1000 genomes]
rs4918000	0.89[ASN][1000 genomes]
rs61863117	0.95[ASN][1000 genomes]
rs7905939	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7905501	TNKS2	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94838200-94847400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:94839000-94841600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:94839200-94841800	Enhancers	HSMM	muscle
4	chr10:94839400-94842000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:94840000-94840800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:94840000-94840800	Bivalent Enhancer	Placenta	Placenta
7	chr10:94840000-94840800	Bivalent Enhancer	Fetal Thymus	thymus
8	chr10:94840200-94841200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:94840200-94842000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:94840200-94845000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:94840400-94840800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:94840400-94841600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:94840400-94841600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:94840400-94844800	Weak transcription	GM12878-XiMat	blood
15	chr10:94840600-94840800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:94840600-94843200	Weak transcription	A549	lung
17	chr10:94840600-94848200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:94840600-94849200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links