Variant report

Variant	rs4918939
Chromosome Location	chr10:97244449-97244450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509691	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188334	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1409713	0.80[ASN][1000 genomes]
rs61868674	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7071071	0.84[ASN][1000 genomes]
rs7100779	0.81[ASN][1000 genomes]
rs725927	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4918939	NOL7	trans	lymphoblastoid	RTeQTL

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:97240600-97244800	Weak transcription	K562	blood
4	chr10:97240600-97245000	Weak transcription	Hela-S3	cervix
5	chr10:97240600-97253000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:97240800-97244800	Weak transcription	HUVEC	blood vessel
7	chr10:97240800-97248800	Weak transcription	Fetal Brain Female	brain
8	chr10:97240800-97253400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:97241000-97244600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:97241000-97247200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:97241400-97245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:97241400-97245000	Weak transcription	Gastric	stomach
14	chr10:97241400-97245400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:97241400-97245600	Weak transcription	Right Ventricle	heart
16	chr10:97241400-97253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:97241600-97245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:97241600-97246800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:97241600-97254000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
21	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
22	chr10:97241800-97245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:97241800-97249200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:97241800-97256400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97242000-97244800	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97242000-97253800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:97242000-97256400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97242200-97244800	Weak transcription	Stomach Mucosa	stomach
29	chr10:97242600-97244600	Weak transcription	Fetal Intestine Large	intestine
30	chr10:97242600-97244800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:97242600-97245000	Weak transcription	Right Atrium	heart
32	chr10:97242600-97247200	Weak transcription	Psoas Muscle	Psoas
33	chr10:97242600-97248200	Weak transcription	Fetal Heart	heart
34	chr10:97242600-97252200	Weak transcription	Pancreas	Pancrea
35	chr10:97242800-97244600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:97242800-97244800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:97242800-97244800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:97242800-97244800	Weak transcription	HSMM	muscle
39	chr10:97242800-97245000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:97242800-97245000	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:97242800-97245000	Weak transcription	Brain Substantia Nigra	brain
42	chr10:97242800-97245000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:97242800-97245200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:97242800-97245600	Weak transcription	Left Ventricle	heart
45	chr10:97242800-97247200	Weak transcription	Liver	Liver
46	chr10:97242800-97256000	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:97243000-97244600	Weak transcription	HSMMtube	muscle
48	chr10:97243000-97244800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:97243000-97245600	Weak transcription	HepG2	liver
50	chr10:97243000-97247000	Weak transcription	Colon Smooth Muscle	Colon

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