Variant report

Variant	rs10509691
Chromosome Location	chr10:97242375-97242376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509692	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11188334	0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs11188337	0.85[JPT][hapmap]
rs11188342	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs1409712	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs1409713	0.82[AFR][1000 genomes]
rs1409714	0.86[JPT][hapmap]
rs17110913	0.85[JPT][hapmap]
rs4918939	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918943	0.85[JPT][hapmap]
rs61868674	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7071071	0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs7089353	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs7100779	0.86[JPT][hapmap]
rs725927	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs752913	0.86[JPT][hapmap]
rs7923718	0.84[JPT][hapmap]
rs943345	0.85[AFR][1000 genomes]
rs943347	0.85[JPT][hapmap]
rs9783274	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10509691	NOL7	trans	lymphoblastoid	RTeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
2	chr10:97232000-97242600	Enhancers	Fetal Intestine Large	intestine
3	chr10:97232400-97242800	Enhancers	Liver	Liver
4	chr10:97233600-97242600	Enhancers	Brain Anterior Caudate	brain
5	chr10:97233600-97242800	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:97233600-97242800	Enhancers	HSMM	muscle
7	chr10:97234000-97242800	Enhancers	Fetal Muscle Leg	muscle
8	chr10:97234400-97242400	Enhancers	HSMMtube	muscle
9	chr10:97236800-97242800	Enhancers	Left Ventricle	heart
10	chr10:97237200-97242800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:97237200-97243000	Enhancers	HepG2	liver
12	chr10:97237200-97254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:97238200-97242600	Weak transcription	Small Intestine	intestine
14	chr10:97238200-97242800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr10:97238400-97242800	Enhancers	Brain Hippocampus Middle	brain
16	chr10:97238600-97242600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:97239800-97242600	Enhancers	Psoas Muscle	Psoas
19	chr10:97240200-97242400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr10:97240600-97242400	Enhancers	Colon Smooth Muscle	Colon
21	chr10:97240600-97242600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:97240600-97242600	Enhancers	Pancreas	Pancrea
23	chr10:97240600-97243000	Enhancers	Rectal Smooth Muscle	rectum
24	chr10:97240600-97244800	Weak transcription	K562	blood
25	chr10:97240600-97245000	Weak transcription	Hela-S3	cervix
26	chr10:97240600-97253000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:97240800-97242600	Enhancers	Fetal Heart	heart
28	chr10:97240800-97242800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:97240800-97242800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:97240800-97244800	Weak transcription	HUVEC	blood vessel
31	chr10:97240800-97248800	Weak transcription	Fetal Brain Female	brain
32	chr10:97240800-97253400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:97241000-97244400	Weak transcription	Placenta	Placenta
34	chr10:97241000-97244600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:97241000-97247200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:97241400-97242400	Weak transcription	Brain Substantia Nigra	brain
38	chr10:97241400-97245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97241400-97245000	Weak transcription	Gastric	stomach
40	chr10:97241400-97245400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:97241400-97245600	Weak transcription	Right Ventricle	heart
42	chr10:97241400-97253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:97241600-97245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:97241600-97246800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:97241600-97254000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
47	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
48	chr10:97241800-97242400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:97241800-97242600	Genic enhancers	Aorta	Aorta
50	chr10:97241800-97245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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