Variant report

Variant	rs752913
Chromosome Location	chr10:97291472-97291473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97290965..97293136-chr10:97317143..97318856,2	K562	blood:
2	chr10:97272650..97274953-chr10:97291349..97294026,2	K562	blood:
3	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:
4	chr10:97289605..97292487-chr10:97295547..97298455,3	K562	blood:
5	chr10:97290800..97293543-chr10:97293667..97298455,5	K562	blood:
6	chr10:97282540..97285200-chr10:97291326..97293754,3	K562	blood:
7	chr10:97285880..97288158-chr10:97290360..97291993,2	K562	blood:
8	chr10:97262883..97265174-chr10:97289179..97291481,2	K562	blood:

No data

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10509691	0.86[JPT][hapmap]
rs10509692	0.80[JPT][hapmap]
rs1075529	0.85[EUR][1000 genomes]
rs11188337	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188342	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12221125	0.94[ASN][1000 genomes]
rs12252701	0.90[JPT][hapmap]
rs1409712	0.82[CEU][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1409713	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1409714	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17110913	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1998911	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4917693	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4917694	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4917696	0.95[JPT][hapmap]
rs4918941	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4918943	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59521949	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61869980	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7089353	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7092561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100779	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896439	0.95[ASN][1000 genomes]
rs7911804	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7923718	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs943347	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9663482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9783274	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
2	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
3	chr10:97280800-97301400	Enhancers	Fetal Heart	heart
4	chr10:97281600-97296400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97281800-97295000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:97282200-97304400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:97282400-97292000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97282400-97292000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97283000-97292000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:97283200-97296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97285200-97292400	Enhancers	Fetal Intestine Large	intestine
12	chr10:97286200-97294800	Weak transcription	Small Intestine	intestine
13	chr10:97286200-97296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:97286800-97293200	Weak transcription	Liver	Liver
15	chr10:97287800-97292800	Enhancers	Brain Cingulate Gyrus	brain
16	chr10:97288600-97291800	Weak transcription	Placenta	Placenta
17	chr10:97288800-97292400	Enhancers	Brain Anterior Caudate	brain
18	chr10:97288800-97292800	Enhancers	Right Atrium	heart
19	chr10:97288800-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:97288800-97294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:97289000-97292400	Enhancers	Fetal Stomach	stomach
22	chr10:97289000-97294800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97289000-97295000	Enhancers	Right Ventricle	heart
24	chr10:97289200-97291600	Enhancers	Primary hematopoietic stem cells	blood
25	chr10:97289200-97292200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr10:97289200-97292400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:97289200-97292600	Enhancers	Lung	lung
28	chr10:97289200-97299200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:97289200-97309000	Enhancers	Left Ventricle	heart
30	chr10:97289400-97291800	Weak transcription	HUVEC	blood vessel
31	chr10:97289400-97292200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:97289400-97296200	Weak transcription	HSMMtube	muscle
33	chr10:97289400-97303800	Weak transcription	HSMM	muscle
34	chr10:97289800-97291800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:97289800-97292600	Genic enhancers	Fetal Intestine Small	intestine
36	chr10:97289800-97293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr10:97290000-97291600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:97290000-97292000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:97290000-97292000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:97290000-97292800	Enhancers	Brain Substantia Nigra	brain
41	chr10:97290000-97298600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:97290000-97301400	Enhancers	Rectal Smooth Muscle	rectum
43	chr10:97290200-97292000	Enhancers	Adipose Nuclei	Adipose
44	chr10:97290200-97292200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr10:97290400-97291600	Enhancers	Fetal Muscle Trunk	muscle
46	chr10:97290400-97291800	Weak transcription	Stomach Mucosa	stomach
47	chr10:97290400-97292200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr10:97290400-97293000	Enhancers	Spleen	Spleen
49	chr10:97290400-97294200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:97290400-97298800	Weak transcription	Duodenum Mucosa	Duodenum

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