Variant report

Variant	rs1409714
Chromosome Location	chr10:97263791-97263792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97262883..97265174-chr10:97289179..97291481,2	K562	blood:
2	chr10:97234291..97235881-chr10:97262986..97265815,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509691	0.86[JPT][hapmap]
rs10509692	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1075529	0.87[EUR][1000 genomes]
rs11188337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221125	0.99[ASN][1000 genomes]
rs12252701	0.95[JPT][hapmap]
rs1409712	0.88[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1409713	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17110913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998911	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4917693	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917694	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4917696	0.95[JPT][hapmap]
rs4918941	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59521949	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61869980	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7071071	0.81[CHB][hapmap]
rs7089353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092561	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100779	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs752913	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896439	1.00[ASN][1000 genomes]
rs7911804	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943347	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9663482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9783274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97245400-97264600	Weak transcription	Ovary	ovary
2	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
3	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:97256800-97273200	Weak transcription	HSMM	muscle
6	chr10:97257400-97264800	Weak transcription	Placenta	Placenta
7	chr10:97257600-97268000	Weak transcription	HSMMtube	muscle
8	chr10:97258200-97264600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:97259200-97267200	Enhancers	Liver	Liver
10	chr10:97259400-97266400	Enhancers	Brain Angular Gyrus	brain
11	chr10:97259400-97269600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:97259600-97265400	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:97259600-97265400	Enhancers	Brain Hippocampus Middle	brain
14	chr10:97259800-97264200	Enhancers	Psoas Muscle	Psoas
15	chr10:97260000-97265400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:97260000-97269000	Enhancers	Left Ventricle	heart
17	chr10:97260000-97272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:97260200-97264600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97260200-97264600	Weak transcription	HUVEC	blood vessel
21	chr10:97260400-97268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:97260600-97263800	Enhancers	K562	blood
23	chr10:97260600-97265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97260600-97265400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr10:97260600-97266200	Enhancers	Right Atrium	heart
26	chr10:97260800-97268000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:97260800-97269400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:97260800-97272800	Weak transcription	Esophagus	oesophagus
29	chr10:97261000-97264400	Enhancers	Fetal Intestine Large	intestine
30	chr10:97261000-97266600	Enhancers	Stomach Mucosa	stomach
31	chr10:97261000-97268000	Enhancers	Fetal Heart	heart
32	chr10:97261200-97264600	Enhancers	Brain Substantia Nigra	brain
33	chr10:97261200-97268000	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:97261200-97268600	Enhancers	Colon Smooth Muscle	Colon
35	chr10:97261400-97264000	Enhancers	Fetal Intestine Small	intestine
36	chr10:97261400-97264600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:97261400-97264600	Enhancers	Right Ventricle	heart
38	chr10:97261400-97265000	Enhancers	Aorta	Aorta
39	chr10:97261600-97263800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97261600-97265200	Enhancers	Gastric	stomach
41	chr10:97261800-97263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:97261800-97265000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:97261800-97266200	Enhancers	Brain Anterior Caudate	brain
44	chr10:97261800-97268400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:97261800-97271200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:97262000-97264000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:97262000-97264800	Enhancers	HepG2	liver
48	chr10:97262000-97271800	Weak transcription	HMEC	breast
49	chr10:97262400-97264200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:97262400-97264600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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