Variant report

Variant	rs9663482
Chromosome Location	chr10:97276018-97276019
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97274675..97276217-chr10:97279235..97281158,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1075529	0.85[EUR][1000 genomes]
rs11188337	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188342	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221125	0.98[ASN][1000 genomes]
rs1409712	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1409713	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1409714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17110913	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998911	0.88[ASN][1000 genomes]
rs4917693	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917694	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918941	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59521949	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61869980	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7089353	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092561	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7100779	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs752913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896439	0.98[ASN][1000 genomes]
rs7911804	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923718	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs943347	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9783274	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97260000-97278400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97262400-97278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:97269000-97277200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
5	chr10:97269200-97277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97269400-97277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97269600-97277200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97270600-97278200	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:97270600-97278600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:97270600-97279200	Enhancers	Left Ventricle	heart
11	chr10:97270600-97279200	Enhancers	Right Atrium	heart
12	chr10:97270600-97279200	Enhancers	Stomach Mucosa	stomach
13	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
15	chr10:97271400-97279800	Enhancers	Fetal Muscle Leg	muscle
16	chr10:97271400-97279800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:97271600-97279800	Enhancers	Fetal Heart	heart
18	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:97272000-97277400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:97272000-97277400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:97272400-97277600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:97272800-97278600	Enhancers	HUVEC	blood vessel
23	chr10:97273000-97277800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:97273200-97276200	Weak transcription	K562	blood
25	chr10:97273200-97277000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:97273200-97277200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:97273400-97277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:97273400-97279800	Enhancers	Colon Smooth Muscle	Colon
29	chr10:97273600-97277000	Weak transcription	Fetal Intestine Large	intestine
30	chr10:97273600-97277200	Weak transcription	Ovary	ovary
31	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:97273800-97277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:97274000-97277000	Weak transcription	Colonic Mucosa	Colon
34	chr10:97274200-97277000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:97274200-97277200	Weak transcription	NH-A	brain
36	chr10:97274200-97278600	Weak transcription	Fetal Lung	lung
37	chr10:97274200-97279200	Enhancers	Pancreas	Pancrea
38	chr10:97274400-97276800	Weak transcription	Fetal Stomach	stomach
39	chr10:97274400-97277600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:97274400-97277600	Weak transcription	Adipose Nuclei	Adipose
41	chr10:97274400-97277600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:97274600-97276200	Weak transcription	Brain Substantia Nigra	brain
44	chr10:97274600-97277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:97274800-97277000	Weak transcription	Fetal Brain Female	brain
46	chr10:97274800-97277600	Enhancers	Stomach Smooth Muscle	stomach
47	chr10:97274800-97277600	Weak transcription	HSMM	muscle
48	chr10:97275000-97276400	Weak transcription	Liver	Liver
49	chr10:97275000-97276600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:97275000-97276600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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