Variant report

Variant	rs1409712
Chromosome Location	chr10:97258464-97258465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97249137..97252026-chr10:97257407..97259761,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10509691	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs1075529	0.84[EUR][1000 genomes]
rs11188334	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188337	0.87[CEU][hapmap];0.81[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188342	0.87[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12221125	0.84[ASN][1000 genomes]
rs1409713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1409714	0.88[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110913	0.87[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4917693	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4917694	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4918941	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4918943	0.87[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59521949	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61869980	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7089353	0.87[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7092561	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7100779	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs752913	0.82[CEU][hapmap];0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7896439	0.85[ASN][1000 genomes]
rs7911804	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7923718	0.88[CEU][hapmap];0.85[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs943347	0.81[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9663482	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9783274	0.88[CEU][hapmap];0.80[CHB][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97239600-97260800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:97241000-97260600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:97241600-97260400	Weak transcription	Fetal Brain Male	brain
4	chr10:97241600-97260600	Weak transcription	Fetal Stomach	stomach
5	chr10:97245400-97259200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:97245400-97264600	Weak transcription	Ovary	ovary
7	chr10:97245800-97259400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97247400-97259800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:97249400-97261200	Weak transcription	Fetal Brain Female	brain
10	chr10:97249800-97274000	Weak transcription	Spleen	Spleen
11	chr10:97250000-97258800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97251200-97268200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:97252400-97262000	Weak transcription	Fetal Lung	lung
14	chr10:97252600-97259200	Weak transcription	Liver	Liver
15	chr10:97253400-97261200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:97253800-97258800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:97254000-97265000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:97254200-97259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97254200-97261000	Weak transcription	Stomach Mucosa	stomach
20	chr10:97254400-97259200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:97254400-97259400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:97254400-97259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:97254400-97259400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:97254400-97259800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:97254400-97259800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:97254400-97259800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:97254400-97260000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:97254400-97260600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:97254400-97261800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:97254600-97258800	Weak transcription	Aorta	Aorta
31	chr10:97254600-97259000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:97254600-97259400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:97254600-97259400	Weak transcription	Brain Angular Gyrus	brain
34	chr10:97255200-97259400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:97255600-97259800	Weak transcription	Fetal Heart	heart
36	chr10:97256400-97260800	Enhancers	Colon Smooth Muscle	Colon
37	chr10:97256800-97259200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:97256800-97261400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:97256800-97273200	Weak transcription	HSMM	muscle
40	chr10:97257200-97259200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:97257200-97259200	Weak transcription	Lung	lung
42	chr10:97257200-97260600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97257400-97260000	Weak transcription	Esophagus	oesophagus
44	chr10:97257400-97260000	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:97257400-97264800	Weak transcription	Placenta	Placenta
46	chr10:97257600-97259400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:97257600-97259400	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97257600-97259600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:97257600-97259600	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:97257600-97260000	Weak transcription	Left Ventricle	heart

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