The 2.0 version of rSNPBase

Variant report

Variant rs12221125
Chromosome Location chr10:97262541-97262542
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:97245400-97264600 Weak transcription Ovary ovary
2 chr10:97249800-97274000 Weak transcription Spleen Spleen
3 chr10:97251200-97268200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr10:97254000-97265000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr10:97256800-97273200 Weak transcription HSMM muscle
6 chr10:97257400-97264800 Weak transcription Placenta Placenta
7 chr10:97257600-97268000 Weak transcription HSMMtube muscle
8 chr10:97258200-97264600 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr10:97259200-97263000 Enhancers HUES6 Cell Line embryonic stem cell
10 chr10:97259200-97267200 Enhancers Liver Liver
11 chr10:97259400-97262600 Enhancers iPS-15b Cell Line embryonic stem cell
12 chr10:97259400-97266400 Enhancers Brain Angular Gyrus brain
13 chr10:97259400-97269600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
14 chr10:97259600-97262800 Enhancers Pancreas Pancrea
15 chr10:97259600-97265400 Enhancers Brain Cingulate Gyrus brain
16 chr10:97259600-97265400 Enhancers Brain Hippocampus Middle brain
17 chr10:97259800-97264200 Enhancers Psoas Muscle Psoas
18 chr10:97260000-97263600 Enhancers Fetal Muscle Leg muscle
19 chr10:97260000-97265400 Enhancers Skeletal Muscle Female skeletal muscle
20 chr10:97260000-97269000 Enhancers Left Ventricle heart
21 chr10:97260000-97272800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr10:97260000-97278400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr10:97260200-97264600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr10:97260200-97264600 Weak transcription HUVEC blood vessel
25 chr10:97260400-97268200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr10:97260600-97263800 Enhancers K562 blood
27 chr10:97260600-97265000 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr10:97260600-97265400 Enhancers Brain Inferior Temporal Lobe brain
29 chr10:97260600-97266200 Enhancers Right Atrium heart
30 chr10:97260800-97268000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr10:97260800-97269400 Enhancers Skeletal Muscle Male skeletal muscle
32 chr10:97260800-97272800 Weak transcription Esophagus oesophagus
33 chr10:97261000-97262800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr10:97261000-97263000 Enhancers Fetal Brain Male brain
35 chr10:97261000-97264400 Enhancers Fetal Intestine Large intestine
36 chr10:97261000-97266600 Enhancers Stomach Mucosa stomach
37 chr10:97261000-97268000 Enhancers Fetal Heart heart
38 chr10:97261200-97262600 Weak transcription Brain Germinal Matrix brain
39 chr10:97261200-97262800 Enhancers iPS-20b Cell Line embryonic stem cell
40 chr10:97261200-97262800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr10:97261200-97263000 Enhancers Fetal Brain Female brain
42 chr10:97261200-97264600 Enhancers Brain Substantia Nigra brain
43 chr10:97261200-97268000 Enhancers Rectal Smooth Muscle rectum
44 chr10:97261200-97268600 Enhancers Colon Smooth Muscle Colon
45 chr10:97261400-97262800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr10:97261400-97264000 Enhancers Fetal Intestine Small intestine
47 chr10:97261400-97264600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr10:97261400-97264600 Enhancers Right Ventricle heart
49 chr10:97261400-97265000 Enhancers Aorta Aorta
50 chr10:97261600-97262600 Enhancers Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015