Variant report

Variant	rs10509692
Chromosome Location	chr10:97236598-97236599
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97236296..97238318-chr10:97239863..97242448,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509691	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11188342	0.81[CHB][hapmap]
rs1409714	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7071071	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7100779	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs752913	0.80[JPT][hapmap]
rs9783274	0.84[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97226400-97236800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:97226400-97242600	Enhancers	Fetal Intestine Small	intestine
4	chr10:97227400-97240400	Weak transcription	Spleen	Spleen
5	chr10:97228600-97236800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97229800-97236600	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:97230400-97236800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:97230600-97239400	Weak transcription	Gastric	stomach
9	chr10:97231600-97236800	Weak transcription	Lung	lung
10	chr10:97231800-97238200	Weak transcription	Aorta	Aorta
11	chr10:97232000-97242600	Enhancers	Fetal Intestine Large	intestine
12	chr10:97232400-97242800	Enhancers	Liver	Liver
13	chr10:97233000-97238600	Weak transcription	Placenta	Placenta
14	chr10:97233400-97236800	Weak transcription	Left Ventricle	heart
15	chr10:97233400-97237400	Enhancers	Stomach Mucosa	stomach
16	chr10:97233600-97236600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:97233600-97237600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:97233600-97237800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:97233600-97242000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:97233600-97242000	Enhancers	Brain Angular Gyrus	brain
21	chr10:97233600-97242600	Enhancers	Brain Anterior Caudate	brain
22	chr10:97233600-97242800	Enhancers	Brain Cingulate Gyrus	brain
23	chr10:97233600-97242800	Enhancers	HSMM	muscle
24	chr10:97233800-97237400	Enhancers	Brain Hippocampus Middle	brain
25	chr10:97233800-97237800	Enhancers	Brain Substantia Nigra	brain
26	chr10:97233800-97239600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:97233800-97241600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:97233800-97241600	Enhancers	Fetal Brain Male	brain
29	chr10:97234000-97237400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:97234000-97237400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:97234000-97237600	Enhancers	H1 Cell Line	embryonic stem cell
32	chr10:97234000-97237600	Enhancers	Brain Germinal Matrix	brain
33	chr10:97234000-97238000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:97234000-97242800	Enhancers	Fetal Muscle Leg	muscle
35	chr10:97234200-97241600	Enhancers	H9 Cell Line	embryonic stem cell
36	chr10:97234200-97241800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97234200-97241800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:97234400-97236800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:97234400-97237800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr10:97234400-97239200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr10:97234400-97242400	Enhancers	HSMMtube	muscle
42	chr10:97234600-97238400	Weak transcription	Fetal Stomach	stomach
43	chr10:97234600-97241200	Enhancers	Right Atrium	heart
44	chr10:97234800-97238400	Weak transcription	HUVEC	blood vessel
45	chr10:97234800-97240000	Enhancers	Fetal Heart	heart
46	chr10:97235000-97236800	Weak transcription	Right Ventricle	heart
47	chr10:97235000-97237600	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:97235000-97238600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:97235000-97239400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:97235000-97240200	Weak transcription	Colonic Mucosa	Colon

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