Variant report

Variant	rs4920969
Chromosome Location	chr5:114976429-114976430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13156452	0.83[ASN][1000 genomes]
rs13164545	0.95[ASN][1000 genomes]
rs13186296	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2303747	0.98[ASN][1000 genomes]
rs3822579	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4920967	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7702283	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7702869	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7702881	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114971800-114976800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:114972800-114976800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:114972800-114977000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:114974200-114977600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:114975400-114977600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:114976000-114976600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:114976200-114978800	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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