Variant report

Variant	rs13164545
Chromosome Location	chr5:114978676-114978677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114978146..114980273-chr5:115173627..115175186,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145782	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10038964	0.81[ASN][1000 genomes]
rs10039750	0.80[ASN][1000 genomes]
rs10041859	0.81[ASN][1000 genomes]
rs10042715	0.81[ASN][1000 genomes]
rs10055677	0.96[CEU][hapmap];0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10057920	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10080011	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10080133	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10478239	0.81[ASN][1000 genomes]
rs10478240	0.81[ASN][1000 genomes]
rs10478241	0.81[ASN][1000 genomes]
rs10478242	0.81[ASN][1000 genomes]
rs11241332	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11738797	0.83[ASN][1000 genomes]
rs11738951	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11742196	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11745902	0.81[ASN][1000 genomes]
rs11953377	0.81[ASN][1000 genomes]
rs12653456	0.83[ASN][1000 genomes]
rs12655570	0.82[ASN][1000 genomes]
rs12655606	0.83[ASN][1000 genomes]
rs12655651	0.81[ASN][1000 genomes]
rs13156452	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13163433	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13163438	0.81[AMR][1000 genomes]
rs13164059	0.83[ASN][1000 genomes]
rs13174037	0.80[ASN][1000 genomes]
rs13183738	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13184618	0.81[ASN][1000 genomes]
rs13186296	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs171774	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs1820631	0.81[ASN][1000 genomes]
rs1820632	0.81[ASN][1000 genomes]
rs2126931	0.81[ASN][1000 genomes]
rs2169772	0.81[ASN][1000 genomes]
rs2270930	0.83[ASN][1000 genomes]
rs2303747	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2546486	0.80[CEU][hapmap]
rs256942	0.92[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs256944	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs256945	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs256947	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256948	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs256949	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256950	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256951	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256952	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256953	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256954	0.96[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256962	0.80[CHB][hapmap]
rs256964	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs256967	0.87[EUR][1000 genomes]
rs256969	0.87[EUR][1000 genomes]
rs256988	0.87[EUR][1000 genomes]
rs256991	0.87[EUR][1000 genomes]
rs256993	0.87[EUR][1000 genomes]
rs256997	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs256998	0.88[EUR][1000 genomes]
rs35010823	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs377290	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3822579	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3984989	0.81[ASN][1000 genomes]
rs400570	0.92[CEU][hapmap];0.80[CHB][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs413059	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs415577	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs424434	0.80[CHB][hapmap]
rs428191	0.81[CHB][hapmap]
rs4920875	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4920967	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4920969	0.95[ASN][1000 genomes]
rs4920976	0.82[ASN][1000 genomes]
rs4920977	0.83[ASN][1000 genomes]
rs4920978	0.83[ASN][1000 genomes]
rs4920982	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4920983	0.80[ASN][1000 genomes]
rs58252413	0.80[ASN][1000 genomes]
rs698365	0.92[CEU][hapmap];0.80[CHB][hapmap];0.86[YRI][hapmap]
rs698366	0.84[CEU][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs698367	0.96[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs716515	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7378941	0.80[ASN][1000 genomes]
rs7702283	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7702869	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7702881	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7723429	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7727624	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs790824	0.81[CHB][hapmap]
rs790825	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9326969	0.80[CHB][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114976200-114978800	Weak transcription	Liver	Liver
2	chr5:114978000-114983600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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