Variant report

Variant	rs4920967
Chromosome Location	chr5:114976298-114976299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:114970889..114973875-chr5:114975413..114978406,3	MCF-7	breast:
2	chr5:114970607..114974645-chr5:114975238..114977621,3	K562	blood:
3	chr5:114970607..114973250-chr5:114975290..114977621,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10055677	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10057920	0.81[ASN][1000 genomes]
rs10080011	0.81[ASN][1000 genomes]
rs10080133	0.81[ASN][1000 genomes]
rs11241332	0.81[ASN][1000 genomes]
rs11738797	0.81[ASN][1000 genomes]
rs11742196	0.81[ASN][1000 genomes]
rs12653456	0.81[ASN][1000 genomes]
rs12655570	0.80[ASN][1000 genomes]
rs12655606	0.81[ASN][1000 genomes]
rs13156452	0.84[ASN][1000 genomes]
rs13163433	0.81[ASN][1000 genomes]
rs13164059	0.81[ASN][1000 genomes]
rs13164545	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13183738	0.81[ASN][1000 genomes]
rs13186296	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs171774	0.90[EUR][1000 genomes]
rs2270930	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2303747	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs256942	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs256944	0.90[EUR][1000 genomes]
rs256945	0.90[EUR][1000 genomes]
rs256947	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256948	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256949	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256950	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256951	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256952	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256953	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256954	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs256964	0.92[EUR][1000 genomes]
rs256967	0.90[EUR][1000 genomes]
rs256969	0.90[EUR][1000 genomes]
rs256988	0.89[EUR][1000 genomes]
rs256991	0.89[EUR][1000 genomes]
rs256993	0.89[EUR][1000 genomes]
rs256997	0.88[EUR][1000 genomes]
rs256998	0.90[EUR][1000 genomes]
rs35010823	0.81[ASN][1000 genomes]
rs377290	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3822579	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs400570	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs413059	0.89[EUR][1000 genomes]
rs415577	0.90[EUR][1000 genomes]
rs4920875	0.81[ASN][1000 genomes]
rs4920969	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4920976	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4920977	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4920978	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4920982	0.81[ASN][1000 genomes]
rs698366	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs698367	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs716515	0.81[ASN][1000 genomes]
rs7702283	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7702869	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7702881	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7723429	0.81[ASN][1000 genomes]
rs7727624	0.81[ASN][1000 genomes]
rs790825	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114971800-114976800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:114972800-114976800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:114972800-114977000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:114974200-114977600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:114974400-114976400	Enhancers	Pancreas	Pancrea
6	chr5:114975400-114977600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:114976000-114976600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:114976200-114978800	Weak transcription	Liver	Liver

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