Variant report

Variant	rs4924385
Chromosome Location	chr15:40037021-40037022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1021410	0.92[CEU][hapmap]
rs1021411	0.88[CEU][hapmap]
rs1166716	1.00[CEU][hapmap]
rs1166718	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1166722	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1166723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12592687	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1565559	0.89[CEU][hapmap]
rs1565561	0.88[CEU][hapmap]
rs1688087	0.92[EUR][1000 genomes]
rs1844863	0.87[CEU][hapmap]
rs1906163	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs1906164	0.96[CEU][hapmap]
rs2029584	0.84[CEU][hapmap]
rs2576929	0.86[EUR][1000 genomes]
rs2576932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2576933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2631714	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2638009	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4115216	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4924389	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4924391	0.92[EUR][1000 genomes]
rs606927	0.91[CHB][hapmap]
rs6492914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6492915	0.91[CHB][hapmap]
rs6492919	0.91[CHB][hapmap]
rs670748	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7179417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7179742	0.84[CEU][hapmap]
rs7179838	0.89[CEU][hapmap]
rs7180846	0.92[CEU][hapmap]
rs8031241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8033485	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8033957	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40029000-40037200	Weak transcription	Right Atrium	heart
3	chr15:40029200-40040200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:40029600-40038600	Weak transcription	NHDF-Ad	bronchial
5	chr15:40033600-40040200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:40034400-40038400	Weak transcription	Osteobl	bone
7	chr15:40034600-40038400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:40034800-40038600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:40035000-40040400	Weak transcription	Adipose Nuclei	Adipose
10	chr15:40035200-40038400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:40035600-40050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:40036200-40039000	Weak transcription	A549	lung
13	chr15:40036600-40037200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:40036800-40037200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:40036800-40037800	Weak transcription	Hela-S3	cervix
16	chr15:40036800-40038400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:40037000-40039600	Enhancers	Primary neutrophils fromperipheralblood	blood

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