Variant report

Variant	rs4926919
Chromosome Location	chr1:47604009-47604010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11211420	0.91[MEX][hapmap];1.00[TSI][hapmap]
rs11211436	0.90[CHB][hapmap]
rs11579614	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11582907	0.82[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes]
rs11587879	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11588382	0.83[AMR][1000 genomes]
rs11589237	0.81[AMR][1000 genomes]
rs12041262	0.85[CHB][hapmap]
rs12141009	0.85[CHB][hapmap]
rs12563180	0.83[ASN][1000 genomes]
rs12564103	0.83[AMR][1000 genomes]
rs12564601	0.80[AMR][1000 genomes]
rs1502909	0.85[CHB][hapmap]
rs1553390	0.85[CHB][hapmap]
rs17102950	0.91[MEX][hapmap]
rs17102978	0.88[TSI][hapmap]
rs1832992	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1847225	0.81[CHB][hapmap]
rs2036462	0.85[CHB][hapmap]
rs2055498	0.91[MEX][hapmap]
rs2202222	0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2224621	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2236332	0.81[AMR][1000 genomes]
rs2292059	0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2292060	0.91[MEX][hapmap];1.00[TSI][hapmap]
rs2897184	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2897185	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3862275	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4531326	0.81[AMR][1000 genomes]
rs4926600	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4927130	0.87[ASN][1000 genomes]
rs57697156	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74074332	0.81[AMR][1000 genomes]
rs74074335	0.85[ASN][1000 genomes]
rs741957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549836	0.81[AMR][1000 genomes]
rs9699826	0.82[MEX][hapmap];1.00[TSI][hapmap]
rs9701888	0.84[CHB][hapmap]
rs9793989	0.91[MEX][hapmap];0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763300	chr1:47358532-47628774	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv870705	chr1:47533705-47620126	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv945929	chr1:47578751-47617495	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47596400-47641000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47603200-47604400	Active TSS	Liver	Liver
3	chr1:47603600-47604200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:47603600-47604800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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