Variant report

Variant	rs4927265
Chromosome Location	chr1:56252255-56252256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493182	0.85[AMR][1000 genomes]
rs10493184	0.85[AMR][1000 genomes]
rs11206666	0.85[AMR][1000 genomes]
rs12021672	0.85[AMR][1000 genomes]
rs12022490	0.85[AMR][1000 genomes]
rs12028981	0.82[AMR][1000 genomes]
rs12033494	0.82[AMR][1000 genomes]
rs12034422	0.85[AMR][1000 genomes]
rs12040991	0.85[AMR][1000 genomes]
rs12042939	0.85[AMR][1000 genomes]
rs12045580	0.85[AMR][1000 genomes]
rs12403234	0.85[AMR][1000 genomes]
rs12404504	0.85[AMR][1000 genomes]
rs12406573	0.85[AMR][1000 genomes]
rs12407474	0.85[AMR][1000 genomes]
rs12409446	0.85[AMR][1000 genomes]
rs17112899	0.85[AMR][1000 genomes]
rs17112961	0.85[AMR][1000 genomes]
rs17113002	0.86[ASN][1000 genomes]
rs17113003	0.85[AMR][1000 genomes]
rs3122551	1.00[ASN][1000 genomes]
rs3122554	0.96[ASN][1000 genomes]
rs4244650	0.85[AMR][1000 genomes]
rs4357568	0.96[ASN][1000 genomes]
rs4926702	0.85[AMR][1000 genomes]
rs4927273	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56248000-56259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:56249000-56255200	Enhancers	Placenta	Placenta
3	chr1:56251600-56252400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:56251800-56252400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:56252000-56252400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:56252000-56252600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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