Variant report

Variant	rs12028981
Chromosome Location	chr1:56331666-56331667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10493182	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493184	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206666	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12021672	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12022490	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12033494	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12034422	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12040991	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12042939	0.90[AMR][1000 genomes]
rs12045580	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12403234	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12404504	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12406573	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12407474	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12409446	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12563455	0.85[AMR][1000 genomes]
rs17112899	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112961	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17113003	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130692	0.96[ASN][1000 genomes]
rs4244650	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4330956	0.91[AMR][1000 genomes]
rs4559553	0.85[AMR][1000 genomes]
rs4926702	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4927265	0.82[AMR][1000 genomes]
rs4927273	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6588580	0.91[AMR][1000 genomes]
rs6687146	0.85[AMR][1000 genomes]
rs7549387	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv947261	chr1:56328792-56335482	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56322400-56333400	Weak transcription	Psoas Muscle	Psoas
2	chr1:56326000-56331800	Weak transcription	Placenta	Placenta
3	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56326600-56333200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56327000-56333600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56327200-56332200	Weak transcription	Fetal Intestine Large	intestine
7	chr1:56328400-56331800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56330600-56332800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:56331200-56332000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:56331400-56332400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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