Variant report

Variant	rs17112961
Chromosome Location	chr1:56323141-56323142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10493182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12021672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12022490	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12028981	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12033494	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12034422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12040991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12042939	0.93[AMR][1000 genomes]
rs12045580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12403234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12404504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12406573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12407474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12409446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12563455	0.88[AMR][1000 genomes]
rs17112899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17113003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130692	0.96[ASN][1000 genomes]
rs4244650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4244652	0.82[AMR][1000 genomes]
rs4244653	0.82[AMR][1000 genomes]
rs4330956	0.94[AMR][1000 genomes]
rs4353139	0.82[AMR][1000 genomes]
rs4559553	0.88[AMR][1000 genomes]
rs4926702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4927265	0.85[AMR][1000 genomes]
rs4927273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4927278	0.81[AMR][1000 genomes]
rs6588580	0.94[AMR][1000 genomes]
rs6687146	0.88[AMR][1000 genomes]
rs7549387	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56315000-56323200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:56320000-56323200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:56320600-56323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56320800-56325600	Weak transcription	NHDF-Ad	bronchial
5	chr1:56321000-56325600	Weak transcription	Fetal Lung	lung
6	chr1:56321200-56325400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56321400-56325400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56321400-56325400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:56321600-56325800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56322400-56325200	Weak transcription	Left Ventricle	heart
11	chr1:56322400-56333400	Weak transcription	Psoas Muscle	Psoas
12	chr1:56322600-56325200	Weak transcription	Fetal Stomach	stomach
13	chr1:56323000-56325400	Weak transcription	Fetal Heart	heart
14	chr1:56323000-56325600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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