Variant report

Variant	rs4130692
Chromosome Location	chr1:56345824-56345825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10493182	0.96[ASN][1000 genomes]
rs10493184	0.96[ASN][1000 genomes]
rs10789010	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10888942	0.83[EUR][1000 genomes]
rs10888944	0.81[EUR][1000 genomes]
rs10888947	0.86[EUR][1000 genomes]
rs10888948	0.83[EUR][1000 genomes]
rs11206666	0.93[ASN][1000 genomes]
rs11206677	0.83[EUR][1000 genomes]
rs11206680	0.93[EUR][1000 genomes]
rs11206681	0.93[EUR][1000 genomes]
rs11206690	0.81[TSI][hapmap]
rs12028981	0.96[ASN][1000 genomes]
rs12033494	0.96[ASN][1000 genomes]
rs12034422	0.96[ASN][1000 genomes]
rs12040991	0.93[ASN][1000 genomes]
rs12045580	0.96[ASN][1000 genomes]
rs12070494	0.97[EUR][1000 genomes]
rs12123418	0.82[EUR][1000 genomes]
rs12124871	0.88[EUR][1000 genomes]
rs12141873	0.86[EUR][1000 genomes]
rs12145137	0.83[EUR][1000 genomes]
rs12404504	0.96[ASN][1000 genomes]
rs12406573	0.96[ASN][1000 genomes]
rs12409446	0.96[ASN][1000 genomes]
rs17112899	0.96[ASN][1000 genomes]
rs17112961	0.96[ASN][1000 genomes]
rs17113003	0.96[ASN][1000 genomes]
rs17113073	0.95[EUR][1000 genomes]
rs4244650	0.93[ASN][1000 genomes]
rs4313435	0.81[EUR][1000 genomes]
rs4367815	0.85[CHB][hapmap]
rs4927273	0.96[ASN][1000 genomes]
rs55693755	0.87[EUR][1000 genomes]
rs58538058	0.88[EUR][1000 genomes]
rs59959484	0.99[EUR][1000 genomes]
rs61774839	0.83[EUR][1000 genomes]
rs61774842	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61774843	0.88[EUR][1000 genomes]
rs6684334	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6684428	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6693526	0.97[EUR][1000 genomes]
rs72904468	0.83[AMR][1000 genomes]
rs7516605	0.99[EUR][1000 genomes]
rs7517995	0.99[EUR][1000 genomes]
rs7540772	0.86[EUR][1000 genomes]
rs7549387	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial
2	chr1:56344200-56348400	Weak transcription	Fetal Lung	lung
3	chr1:56344800-56348400	Weak transcription	Ovary	ovary
4	chr1:56345200-56347000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56345400-56346000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links