Variant report

Variant	rs11206680
Chromosome Location	chr1:56364414-56364415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493183	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493185	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10493187	1.00[ASN][1000 genomes]
rs10493189	1.00[ASN][1000 genomes]
rs10493190	1.00[ASN][1000 genomes]
rs10493191	1.00[ASN][1000 genomes]
rs10789010	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10888940	1.00[ASN][1000 genomes]
rs10888942	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10888947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206673	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206677	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206689	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11206690	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11582662	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12058087	1.00[ASN][1000 genomes]
rs12070494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12092701	1.00[ASN][1000 genomes]
rs12118218	1.00[ASN][1000 genomes]
rs12119904	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12120132	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12123418	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123610	1.00[ASN][1000 genomes]
rs12124871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138137	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12141873	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145137	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112888	1.00[ASN][1000 genomes]
rs17113073	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067637	1.00[ASN][1000 genomes]
rs41285922	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4130692	0.93[EUR][1000 genomes]
rs55693755	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58538058	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59959484	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61774839	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61774842	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61774843	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777585	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61777621	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6659096	1.00[ASN][1000 genomes]
rs6684334	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6684428	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6691673	1.00[ASN][1000 genomes]
rs6693526	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7516605	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517205	1.00[ASN][1000 genomes]
rs7517995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530878	1.00[ASN][1000 genomes]
rs7540772	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56363400-56365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56363600-56364600	Enhancers	NHDF-Ad	bronchial
3	chr1:56363600-56364800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links