Variant report

Variant	rs10789010
Chromosome Location	chr1:56353295-56353296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10888942	0.82[EUR][1000 genomes]
rs10888944	0.80[EUR][1000 genomes]
rs10888947	0.89[EUR][1000 genomes]
rs10888948	0.87[EUR][1000 genomes]
rs11206677	0.82[EUR][1000 genomes]
rs11206680	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11206681	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11579959	0.86[ASN][1000 genomes]
rs12021672	0.89[ASN][1000 genomes]
rs12022490	0.89[ASN][1000 genomes]
rs12042939	0.93[ASN][1000 genomes]
rs12070494	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12123418	0.85[EUR][1000 genomes]
rs12124871	0.92[EUR][1000 genomes]
rs12141873	0.89[EUR][1000 genomes]
rs12145137	0.86[EUR][1000 genomes]
rs12403234	0.89[ASN][1000 genomes]
rs12407474	0.96[ASN][1000 genomes]
rs12563455	0.93[ASN][1000 genomes]
rs17113073	0.98[EUR][1000 genomes]
rs4130692	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244652	0.93[ASN][1000 genomes]
rs4244653	0.93[ASN][1000 genomes]
rs4271254	0.86[ASN][1000 genomes]
rs4313435	0.80[EUR][1000 genomes]
rs4330956	0.93[ASN][1000 genomes]
rs4353139	0.93[ASN][1000 genomes]
rs4367815	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs4378251	0.86[ASN][1000 genomes]
rs4384274	0.86[ASN][1000 genomes]
rs4394699	0.86[ASN][1000 genomes]
rs4474303	0.86[ASN][1000 genomes]
rs4559553	0.93[ASN][1000 genomes]
rs4576690	0.86[ASN][1000 genomes]
rs4593870	0.86[ASN][1000 genomes]
rs4625325	0.86[ASN][1000 genomes]
rs4633318	0.86[ASN][1000 genomes]
rs4926702	0.89[ASN][1000 genomes]
rs4927278	0.93[ASN][1000 genomes]
rs4927283	0.86[ASN][1000 genomes]
rs4927284	0.86[ASN][1000 genomes]
rs55693755	0.90[EUR][1000 genomes]
rs58538058	0.92[EUR][1000 genomes]
rs59959484	0.98[EUR][1000 genomes]
rs61774839	0.82[EUR][1000 genomes]
rs61774842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61774843	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6588580	0.93[ASN][1000 genomes]
rs6588589	0.86[ASN][1000 genomes]
rs6684334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6684428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6687146	0.93[ASN][1000 genomes]
rs6693526	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72904468	0.86[AMR][1000 genomes]
rs7516605	0.98[EUR][1000 genomes]
rs7517995	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs7540772	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56346000-56354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56350800-56353800	Enhancers	Fetal Stomach	stomach
3	chr1:56352000-56353400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56353000-56353600	Enhancers	Fetal Intestine Small	intestine
5	chr1:56353000-56354400	Weak transcription	NHDF-Ad	bronchial

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