Variant report

Variant	rs6588580
Chromosome Location	chr1:56392995-56392996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10493182	0.94[AMR][1000 genomes]
rs10493184	0.94[AMR][1000 genomes]
rs10789010	0.93[ASN][1000 genomes]
rs11206666	0.94[AMR][1000 genomes]
rs11579959	0.93[ASN][1000 genomes]
rs12021672	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12022490	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12028981	0.91[AMR][1000 genomes]
rs12033494	0.91[AMR][1000 genomes]
rs12034422	0.94[AMR][1000 genomes]
rs12040991	0.94[AMR][1000 genomes]
rs12042939	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12045580	0.94[AMR][1000 genomes]
rs12403234	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12404504	0.94[AMR][1000 genomes]
rs12406573	0.94[AMR][1000 genomes]
rs12407474	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12409446	0.94[AMR][1000 genomes]
rs12563455	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17112899	0.94[AMR][1000 genomes]
rs17112961	0.94[AMR][1000 genomes]
rs17113003	0.94[AMR][1000 genomes]
rs4244650	0.94[AMR][1000 genomes]
rs4244652	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4244653	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4271254	0.93[ASN][1000 genomes]
rs4330956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4353139	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4367815	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4378251	0.93[ASN][1000 genomes]
rs4384274	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4394699	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4474303	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4478853	0.88[AFR][1000 genomes]
rs4559553	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4576690	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4593870	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4625325	0.93[ASN][1000 genomes]
rs4633318	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4926702	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4927273	0.94[AMR][1000 genomes]
rs4927278	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4927283	0.93[ASN][1000 genomes]
rs4927284	0.93[ASN][1000 genomes]
rs61774842	0.93[ASN][1000 genomes]
rs6588589	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6684334	0.84[ASN][1000 genomes]
rs6684428	0.93[ASN][1000 genomes]
rs6687146	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:56386800-56395400	Weak transcription	Placenta	Placenta
4	chr1:56386800-56396600	Weak transcription	Esophagus	oesophagus
5	chr1:56387800-56393000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56387800-56393400	Weak transcription	Adipose Nuclei	Adipose
7	chr1:56392400-56393200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:56392600-56393000	Enhancers	Aorta	Aorta
9	chr1:56392800-56393000	Enhancers	Fetal Stomach	stomach
10	chr1:56392800-56393000	Enhancers	Right Atrium	heart
11	chr1:56392800-56393200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:56392800-56393200	Enhancers	Fetal Muscle Trunk	muscle
13	chr1:56392800-56394800	Enhancers	Fetal Lung	lung

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