Variant report

Variant	rs4378251
Chromosome Location	chr1:56398837-56398838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10789010	0.86[ASN][1000 genomes]
rs11579959	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800033	1.00[EUR][1000 genomes]
rs11802771	1.00[EUR][1000 genomes]
rs11811576	1.00[EUR][1000 genomes]
rs12021672	0.89[ASN][1000 genomes]
rs12022490	0.89[ASN][1000 genomes]
rs12042939	0.93[ASN][1000 genomes]
rs12403234	0.89[ASN][1000 genomes]
rs12407474	0.89[ASN][1000 genomes]
rs12563455	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244652	0.93[ASN][1000 genomes]
rs4244653	0.93[ASN][1000 genomes]
rs4271254	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4330956	0.93[ASN][1000 genomes]
rs4353139	0.93[ASN][1000 genomes]
rs4367815	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs4367816	0.89[AMR][1000 genomes]
rs4367817	0.89[AMR][1000 genomes]
rs4384274	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394699	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4474303	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4559553	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4576690	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593870	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625325	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4633318	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4926702	0.89[ASN][1000 genomes]
rs4927278	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4927283	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927284	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58459838	1.00[EUR][1000 genomes]
rs60853722	1.00[EUR][1000 genomes]
rs61774842	0.86[ASN][1000 genomes]
rs6588580	0.93[ASN][1000 genomes]
rs6588589	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684428	0.86[ASN][1000 genomes]
rs6687146	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:56396800-56399000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:56398000-56403400	Weak transcription	Ovary	ovary
5	chr1:56398400-56404000	Weak transcription	Fetal Lung	lung
6	chr1:56398600-56403600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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