Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11579959	1.00[AMR][1000 genomes]
rs12563455	0.81[AMR][1000 genomes]
rs4244652	0.86[AMR][1000 genomes]
rs4244653	0.86[AMR][1000 genomes]
rs4271254	1.00[AMR][1000 genomes]
rs4353139	0.86[AMR][1000 genomes]
rs4367815	0.83[AMR][1000 genomes]
rs4367817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4378251	0.89[AMR][1000 genomes]
rs4384274	0.94[AMR][1000 genomes]
rs4394699	0.94[AMR][1000 genomes]
rs4474303	0.94[AMR][1000 genomes]
rs4559553	0.81[AMR][1000 genomes]
rs4576690	0.94[AMR][1000 genomes]
rs4593870	0.94[AMR][1000 genomes]
rs4625325	0.89[AMR][1000 genomes]
rs4633318	0.94[AMR][1000 genomes]
rs4927278	0.89[AMR][1000 genomes]
rs4927283	1.00[AMR][1000 genomes]
rs4927284	1.00[AMR][1000 genomes]
rs6588589	0.94[AMR][1000 genomes]
rs6687146	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56402000-56416800	Weak transcription	Aorta	Aorta
2	chr1:56404600-56416200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56409600-56410000	Enhancers	Placenta	Placenta
4	chr1:56409600-56410000	Enhancers	Pancreas	Pancrea
5	chr1:56409600-56410600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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